Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60490 179 / 2e-55 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 167 / 3e-51 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT2G20520 114 / 2e-30 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT1G03870 112 / 9e-30 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT5G44130 111 / 2e-29 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT2G04780 79 / 2e-17 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G46550 62 / 8e-11 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 61 / 2e-10 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 57 / 4e-09 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT2G45470 55 / 1e-08 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036113 [exp] 375 / 4e-132 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 199 / 2e-63 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 195 / 8e-62 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 184 / 3e-57 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 179 / 2e-55 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 175 / 8e-54 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036115 [exp] 162 / 4e-49 AT5G03170 151 / 4e-45 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 159 / 7e-48 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 159 / 1e-47 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210600 [exp] 233 / 2e-76 AT5G60490 188 / 5e-59 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.009G012200 [exp] 219 / 5e-71 AT5G60490 167 / 5e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 207 / 1e-66 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 207 / 1e-66 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G013300 [exp] 199 / 5e-63 AT5G60490 176 / 3e-54 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 195 / 1e-61 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151432 [exp] 193 / 6e-61 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 193 / 7e-61 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121100 [exp] 191 / 4e-60 AT5G60490 168 / 2e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 191 / 7e-60 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10002985 pacid=23176896 polypeptide=Lus10002985 locus=Lus10002985.g ID=Lus10002985.BGIv1.0 annot-version=v1.0 ATGAAGAATCAAATCATCCCCTCATCAATTTCCCTCATCCTCCTCCTCCTCCCGGTCACCCTTTCACAGTCTCCCGCTTCAGCACCAGCAAATCCACCAC CTTCAACATCAATCGCTGCTCAAGTTGCTGCAACTCCGGGCCCACTAGACGTGGTCAAGATCCTGAATAAGGCAGGCCGTTTCACCGTCTTCCTCCGACT GCTACAATCAACGCAAGAAAACACCGAGTTGTACCAGCAGCTCAACGAAACCCACAACAGCGCAACCGTTTTCGCTCCATCCGACGGCGCTTTCGCCGGC CTCAAGCCAGGGACACTCAATTCTTTAACCGACGGCGAAAAGTCTGAGCTAGTGAAATTCCACATCGTCCCCTTTGCCATCGATTCTTCCCAATTCCAGA CGGTCAGTAACCCTATCAGGACTCAGGCCGGTTCTGGAAACCGCCTTTCAATGAATATTACCACCGACGTGACGGGGAGCTCCGTCAATATTAGCACGGG GATTGTCAATACGACAATTTCGGGCACCGTTTATGCCGACAGCAGGCTGGCGATTTACCAGGTGGACAAGGTGCTGCTTCCTCTTGACGTATTCATTCCC AAGCCTCCGACTCCGGCACCTGCTCTGGCGCTGCACAAGCCGACCAAGAAAGGGGGCGACGCTGGTGCTGCTGAGAGCCCTGTTGTTCCCAAGAGCGATG ATTCTGGTGCTGTGGTGAGGCGTGTTTGGAAACTTGAGAATTGGGGTTTCGTTCTGGCTATTGGGTGGATTGTTGCTGCAACGTTTTGA
AA sequence Show only first row Show all	>Lus10002985 pacid=23176896 polypeptide=Lus10002985 locus=Lus10002985.g ID=Lus10002985.BGIv1.0 annot-version=v1.0 MKNQIIPSSISLILLLLPVTLSQSPASAPANPPPSTSIAAQVAATPGPLDVVKILNKAGRFTVFLRLLQSTQENTELYQQLNETHNSATVFAPSDGAFAG LKPGTLNSLTDGEKSELVKFHIVPFAIDSSQFQTVSNPIRTQAGSGNRLSMNITTDVTGSSVNISTGIVNTTISGTVYADSRLAIYQVDKVLLPLDVFIP KPPTPAPALALHKPTKKGGDAGAAESPVVPKSDDSGAVVRRVWKLENWGFVLAIGWIVAATF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	0	1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	1.0	0.9750
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	1.4	0.9664
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	3.0	0.9379
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	5.7	0.9140
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	5.9	0.9110
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	6.0	0.8752
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	6.7	0.8602
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Lus10035586 [exp]	7.4	0.8807
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	8.4	0.8989
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	8.9	0.8809

Compare expression of checked genes

Lus10002985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.