Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036114 [exp] 147 / 9e-45 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 47 / 4e-07 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10019929 [exp] 42 / 4e-05 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 40 / 0.0001 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 40 / 0.0003 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 38 / 0.0008 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013300 [exp] 53 / 4e-09 AT5G60490 176 / 3e-54 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G014966 [exp] 53 / 6e-09 AT5G60490 179 / 1e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G015032 [exp] 47 / 9e-07 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.001G320800 [exp] 45 / 4e-06 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151432 [exp] 44 / 5e-06 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.009G012100 [exp] 44 / 9e-06 AT5G60490 167 / 3e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 44 / 1e-05 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 43 / 1e-05 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 43 / 1e-05 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.019G121200 [exp] 43 / 1e-05 AT5G03170 166 / 2e-50 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002986 pacid=23176899 polypeptide=Lus10002986 locus=Lus10002986.g ID=Lus10002986.BGIv1.0 annot-version=v1.0 ATGCTTCTCTCCACTTCCCAATTCCAGACCATCAGCAACCCTTTGAGGACTCTAACCGGGTCGGGTAAGCAGTTCCAGCTCAATGTCACTACCAGTGACA GCGTGGTGAATGTCACCAGTGGCCTCACTAACACCAGTCTCCGGAATTGTCTACGCGGACAATCAAATTGCGATTTATCAGGTGGACAAGGTTCTGCTCC CGAAGAGGTTTTCTCGCCCAAGTCCTTGACGCCAGCTCCGGCTCCGGCGAAGCATTTGAAGGACGAGAACGCGGACAGTCCGGCCGGTGCTAAGAATGCT TCTGATGGGGAGTTGGACTGTGTTGTGGATAAGTTGAACGTTTTGATGGTCGGAGTTAAGACGGTTGACGCGGTGGTTTTGTCCTTCTTGTGA
AA sequence Show only first row Show all	>Lus10002986 pacid=23176899 polypeptide=Lus10002986 locus=Lus10002986.g ID=Lus10002986.BGIv1.0 annot-version=v1.0 MLLSTSQFQTISNPLRTLTGSGKQFQLNVTTSDSVVNVTSGLTNTSLRNCLRGQSNCDLSGGQGSAPEEVFSPKSLTPAPAPAKHLKDENADSPAGAKNA SDGELDCVVDKLNVLMVGVKTVDAVVLSFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002986 [exp]	0	1
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	3.2	0.8780
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	3.5	0.8903
					Lus10021242 [exp]	6.9	0.8695
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036212 [exp]	8.2	0.8077
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	9.2	0.8563
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	10.7	0.8535
					Lus10002735 [exp]	13.4	0.7519
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	13.4	0.8455
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	14.2	0.8427
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	15.7	0.8400

Compare expression of checked genes

Lus10002986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.