Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10270 659 / 0 GRP23 glutamine-rich protein 23 (.1) AT3G49240 270 / 2e-78 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60980 227 / 1e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G60960 219 / 6e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28340 187 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28380 185 / 3e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 147 / 5e-36 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 138 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 134 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 133 / 5e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024469 [exp] 918 / 0 AT1G10270 620 / 0.0 glutamine-rich protein 23 (.1) Lus10022406 [exp] 264 / 2e-76 AT3G49240 769 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018109 [exp] 264 / 2e-76 AT3G49240 763 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024470 [exp] 235 / 1e-70 AT1G10270 209 / 3e-62 glutamine-rich protein 23 (.1) Lus10019524 [exp] 140 / 1e-33 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 137 / 7e-33 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 133 / 2e-31 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039056 [exp] 130 / 2e-30 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029737 [exp] 129 / 2e-30 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227800 [exp] 768 / 0 AT1G10270 672 / 0.0 glutamine-rich protein 23 (.1) Potri.003G002950 [exp] 749 / 0 AT1G10270 646 / 0.0 glutamine-rich protein 23 (.1) Potri.012G015400 [exp] 239 / 2e-67 AT3G49240 613 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 157 / 3e-39 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 142 / 8e-35 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 140 / 2e-34 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074700 [exp] 138 / 4e-34 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 138 / 8e-34 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 138 / 1e-33 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 137 / 2e-33 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002990 pacid=23166280 polypeptide=Lus10002990 locus=Lus10002990.g ID=Lus10002990.BGIv1.0 annot-version=v1.0 ATGTCTCTTTACCGTCTCCTCCTGCTCCACCACCGCTCCTCTTCCTCATCTGCCACCTCCTATGCACCGTCCTTAACGCGAGCCCTCCACTACTTCACCT CACCACCCGCCACCTCTCACCCACTCACCACCCCTCAACTTTCAATCCCTTCATCGCGACGAAGTTTTGCCTTCTCCTCCGCTGAAGAAGCTGCCGCTGA ACGCCGCCGGCGGAAACGGCGCCTCCGCATCGAACCTCCGCTGCACGCTCTTCAGCGTAACCCTTACCCTCCTCCTCGGGATCCCAATGCTCCCCGTCTT CCCGATTCCACTTCAGCTCTTGTTGGCCCTCGACTTAGCTTGCATAACAATGTCCAGTCCCTTATTAGAGCCTTTGATCTTGATGCTGCTTCCTACGTCG CTCGCACCGCTGTTTTCTCCAGAACTAGGCCCACTGTCTTCACTTGTAATGCAATTATAGCTGCTATGTATCGAGCTAAACGGTACAGTGACGCCATTGC TTTGTTTAAATACTTCTTCGAGCAAAATGATGTAGTGCCTAATGTCGTCTCTTACAATAATGTGATCAACGCACACTGTGATGAAGGGAGAGTTGATATA GGGCTTGAGGTTTACAAGCATATTATTGCGAATGCACCCTTTAGTCCTTCCCCTGTTACGTATAGACATTTGACTAAAGGCTTGATCGATGCTGGGAGAA TCGAGGAGGCTGTTGACCTGTTGAGAGAGATGTTGACGAGGGGGCATGGTGCTGACTCTTTGGTTTATAATAACTTGATTAAAGGGTTCTTGGAGCTAGG TAATCTGGATAAGGCAAATGAGTTCTTTGATGAGCTGAAAGGAAGGTGTTTGGTATATGACGGGGTGGTAAATGCTACTGTCATGGATTGGTGGTTTAAG CAAGGAAAGGACAAGGAAGCTATGGAGAGTTACAGGTCGTTGATGGCTAGAAAATTTAGAATGGTACCTGCTACTTGTAATGTGCTTCTTGAGGTTTTGC TTCGGTATGGGAAGAAAGACGCAGCCATGGAGTTGTTCGAGGAAATGTTGGATAATCATACCCCACCGACACTCCAAGCTGTGAATTCTGAAACTTTTAG TCTAATGGTGGACGAGTGTTTTAAAGAAGGGAAATTTGATGAGGCCGTCGAAACATTTAGGAAGGCTGGTACGAAGGCTAAGTCAAGGCCTTTTGCGATG GATGTTGCTGGTTACAATAATATCATCATAAGATTTTCAGAGAAAGAAATGATGACAGAGGCTGAGCAGTTTTTTACTGAATTGATGAGCAAGTCCTTGT CTCCAAATGTCACAAGCTACAAGACGTTGATTGAGGCATATCTGAAGTTGGAAAGGATTGACGATGCCCTTAAGATTTTTGACAAAATGGTTGATGCTGG CCTGTGGGTGGTGGCAAGTTTTGGCACGAGGGTTTTTGGTGAGTTGATAAAAAACGGTAAAGCAGTGGAATGTGCACAGATTATGATAAAAATGGGGACT ATGATGGCTGAGAAAATGGGAGAGAGAGATGTGAAACCTGATTCCATGATTTATGATGTTGTGGTTAGGGGCCTTTGTGATGCTGGAGAATTAGACTGCA GCAGAGATGTGATAGACCAAATGATGTCCTATGGTGTTGGTATTCACCCTTCTTTGAAAGAATTTGCAAGGAAGGCATTCGGAGATGCTGGGCGGGGTGA AGAGATTGAGAAGCTTCTAGATGAAAATCAATACAGGAATACTCAAAGACCACCGTTCACGGGTAGGCAGCCTCAAACTCTATTTGGAAGCGAACAGTTC TCAGGATCATCTTCAACAGGTGTAAACTCACTTTTTGGTCAGCCAAGATACCAGTCACCATCTGCTTATAGTAGCGCAGGGCAATCAGCATCCAGTTCTT CCCAATGGACAGCGCAGCAGAGTTCACTTGCTTCTCAAAGGTGGGGACAGGCGCCATCTGAGTCGGCTCCCCTACAAGGACAACAACCATCGTGGTCCTC CCAAAATCACCAGCAATTTGGCTCGTCTCCAGCACAAGGACAACAACCACCGTGGTCCTCCCAAAATCACCAGAAATTTGGCTCGTCTCCAGCACAAGGA CAACAACCATCGTGGTCCTCCCAAAATCACCAGCAATTTGGCTCGTCTCCAGCACAAGAACAGAAACCATCGTGGTCATCCCCGAATCACCAGCAATCTG GACAGTCTACAACGCAAGGACATCAACCATTGTGGTCCTCCCGAAATCACCAGCAATCTAGCTCGTCTCCAACTCAAGGACAACAACCATTGTGGTCCTC CTCAAATCACCAGCAGTCTGGCCCGTCTCCTACACAAGGACAACAACCATCATGGTCATCTCCCACTCGAGGACAGCAACCCTCTTGGTCGTCTCCTACG CAAGAGCAAGCGGCACCCTGGTCTCCTTCAATGCATGGACAGAATTCATCCCGTTCTTCTCCATCGCAAGGACAACAACCATCATGGTCATCTCTTGCGG CAGGGTTGAACTCATCTCCATCCCATGGTAGTGGACAGTCATATTTGTCCTCTCGAGATGCAGGACAGCAGCAATCATCCTGGTCCTCTCCTATTGGCGC ACAGCAGTCCTCAGGTACCCAGCATACAAATAGAACTTATGAAAATGCTTCGTCTCGGGCATCATATGGTTCTTCAGAAGCACCTTATGTTCCTGCGCAA AATGCTGGACAGCCTTCCTCTATTGCGTCCCATGTAGCGGGCAACCATCATCCTACTGGATACCATCACGTGGCAGGGCAAAACCGTTGGCAAGACAGCC AACAGCAGTTTGATCCAATGGCGAGACAACAACATACTAGACTCCCAGAGAGTGCTGGGGGACATCCACAATCACCTCAATGGCAAGGCAGCCACCACTC TCCGGTGGCAGGACGAGACCAGTGGCAAGACAACCAACAACAGTTTGATCCAATGGGCGGACAACAACATCAACAACAACAAACTGAACGTCCAGATAAC CCGGACAGTCATTCACAGTCATCTCAATGGCAACAGTACAGCCAGCGTGCCACAGCTTAA
AA sequence Show only first row Show all	>Lus10002990 pacid=23166280 polypeptide=Lus10002990 locus=Lus10002990.g ID=Lus10002990.BGIv1.0 annot-version=v1.0 MSLYRLLLLHHRSSSSSATSYAPSLTRALHYFTSPPATSHPLTTPQLSIPSSRRSFAFSSAEEAAAERRRRKRRLRIEPPLHALQRNPYPPPRDPNAPRL PDSTSALVGPRLSLHNNVQSLIRAFDLDAASYVARTAVFSRTRPTVFTCNAIIAAMYRAKRYSDAIALFKYFFEQNDVVPNVVSYNNVINAHCDEGRVDI GLEVYKHIIANAPFSPSPVTYRHLTKGLIDAGRIEEAVDLLREMLTRGHGADSLVYNNLIKGFLELGNLDKANEFFDELKGRCLVYDGVVNATVMDWWFK QGKDKEAMESYRSLMARKFRMVPATCNVLLEVLLRYGKKDAAMELFEEMLDNHTPPTLQAVNSETFSLMVDECFKEGKFDEAVETFRKAGTKAKSRPFAM DVAGYNNIIIRFSEKEMMTEAEQFFTELMSKSLSPNVTSYKTLIEAYLKLERIDDALKIFDKMVDAGLWVVASFGTRVFGELIKNGKAVECAQIMIKMGT MMAEKMGERDVKPDSMIYDVVVRGLCDAGELDCSRDVIDQMMSYGVGIHPSLKEFARKAFGDAGRGEEIEKLLDENQYRNTQRPPFTGRQPQTLFGSEQF SGSSSTGVNSLFGQPRYQSPSAYSSAGQSASSSSQWTAQQSSLASQRWGQAPSESAPLQGQQPSWSSQNHQQFGSSPAQGQQPPWSSQNHQKFGSSPAQG QQPSWSSQNHQQFGSSPAQEQKPSWSSPNHQQSGQSTTQGHQPLWSSRNHQQSSSSPTQGQQPLWSSSNHQQSGPSPTQGQQPSWSSPTRGQQPSWSSPT QEQAAPWSPSMHGQNSSRSSPSQGQQPSWSSLAAGLNSSPSHGSGQSYLSSRDAGQQQSSWSSPIGAQQSSGTQHTNRTYENASSRASYGSSEAPYVPAQ NAGQPSSIASHVAGNHHPTGYHHVAGQNRWQDSQQQFDPMARQQHTRLPESAGGHPQSPQWQGSHHSPVAGRDQWQDNQQQFDPMGGQQHQQQQTERPDN PDSHSQSSQWQQYSQRATA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10002990 [exp]	0	1
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	1.0	0.9564
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	1.7	0.9412
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	4.9	0.9459
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	5.7	0.9217
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	6.3	0.9300
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	6.9	0.9376
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	9.5	0.9339
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024470 [exp]	10.7	0.9150
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	13.0	0.9332
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	14.3	0.9348

Compare expression of checked genes

Lus10002990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.