Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18530 266 / 2e-87 Protein of unknown function (DUF707) (.1) AT4G12840 245 / 2e-79 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G11170 167 / 1e-48 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G61240 159 / 1e-45 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT3G27470 132 / 1e-35 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 132 / 1e-35 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G08040 125 / 2e-33 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 124 / 9e-33 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT2G28310 123 / 1e-32 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G24570 122 / 5e-32 Protein of unknown function (DUF707) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024473 [exp] 240 / 9e-81 AT4G18530 135 / 6e-39 Protein of unknown function (DUF707) (.1) Lus10041107 [exp] 182 / 6e-55 AT4G12840 416 / 7e-145 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10036434 [exp] 171 / 5e-50 AT4G12840 402 / 9e-139 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10002141 [exp] 176 / 2e-49 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10006728 [exp] 167 / 1e-48 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10038303 [exp] 167 / 2e-48 AT1G61240 507 / 2e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10018456 [exp] 164 / 2e-47 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10011228 [exp] 162 / 8e-46 AT1G61240 507 / 4e-177 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10035229 [exp] 145 / 4e-41 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227700 [exp] 277 / 6e-92 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 273 / 2e-90 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.019G053000 [exp] 239 / 6e-77 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 220 / 9e-70 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 165 / 4e-48 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 163 / 2e-47 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.008G185600 [exp] 137 / 1e-37 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 129 / 6e-35 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.010G047200 [exp] 129 / 1e-34 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 123 / 2e-32 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10002991 pacid=23166277 polypeptide=Lus10002991 locus=Lus10002991.g ID=Lus10002991.BGIv1.0 annot-version=v1.0 ATGAAGTCTCTCCATTCTGTTTTTGGGTTACCAGATTCGAAGAACAGATTTTGGCTTTGCAGTCTCTTCATTGCAGTTTCTTTGGTTTCTGGTATATACT TTCTGGGTCTAGCATTTGTTGGAAAGGAATATAAACAAGGGTTCTTAAGATGGCCAGTCATTGGATCGATGGCGAGTGGAAAATCTAACAAATGCAAGAA TCAATGGATGCCAGTCGGGAGCGAAGCTTTGCCCAGTGGCATAGTTGTTCGGACATCTGACTTGGAAATGCGTCCTTTATGGACTGCTTCGAGGAAAGAA TTCCCGTTAAGTGAGTTTGCTGTGATGCTGTTTCACTATGATGGTGCTATGGAGAAATGGGAGGACCTTCCATGGAATGCTCGTGCAATTCACATATCTG CTGTAAATCAAACTAAATGGTATCTGTCCATTGTTGAAGAAGAAGGGCTTGAAATATCACAACCAGCACTTGATCCTTCTAAGTCAGAGGTGCACCATCC AATTACTGCTCGCAAAAGCAGATCTGCAGTTCACAGTTGGGTGGAAATGATGGCACCTGTTTTCTCGAAGGCAGCATGGCGCTGTGTATGGTACATGATA CAGGTACTGGATCTCTCGAGCGTTCTCCTAACTTTCTGCACTTGTGTAACACACCGATCATCAGTCTTTTGTTCAATATTCATACAGAATGACTTGATCC ACGCTTGGGGTTTGGATACGCAACTTGGTTACTGTGCACAAACTGTTGTTCAGGGTGACAGGGCGAAAAATGTCGGTGTGGTCGATTCTGAGTACATAGT ACACCTTGGCTTGCCCACACTTGGTGTCTTCAACAAAACTCAGGCAAGTACAAGTAGCTCTTCTACCTAA
AA sequence Show only first row Show all	>Lus10002991 pacid=23166277 polypeptide=Lus10002991 locus=Lus10002991.g ID=Lus10002991.BGIv1.0 annot-version=v1.0 MKSLHSVFGLPDSKNRFWLCSLFIAVSLVSGIYFLGLAFVGKEYKQGFLRWPVIGSMASGKSNKCKNQWMPVGSEALPSGIVVRTSDLEMRPLWTASRKE FPLSEFAVMLFHYDGAMEKWEDLPWNARAIHISAVNQTKWYLSIVEEEGLEISQPALDPSKSEVHHPITARKSRSAVHSWVEMMAPVFSKAAWRCVWYMI QVLDLSSVLLTFCTCVTHRSSVFCSIFIQNDLIHAWGLDTQLGYCAQTVVQGDRAKNVGVVDSEYIVHLGLPTLGVFNKTQASTSSSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18530			Protein of unknown function (D...		Lus10002991 [exp]	0	1
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	1.7	0.8487
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	3.2	0.8402
AT5G23200			unknown protein		Lus10010192 [exp]	3.9	0.8182
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	8.4	0.8100
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	8.5	0.8129
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	8.9	0.8158
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	9.5	0.8149
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	11.0	0.7957
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	13.4	0.8051
AT3G49990			unknown protein		Lus10015447 [exp]	15.0	0.8109

Compare expression of checked genes

Lus10002991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.