Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11890 176 / 3e-55 adenylate cyclases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024472 [exp] 441 / 3e-159 AT2G11890 189 / 2e-60 adenylate cyclases (.1.2) Lus10008820 [exp] 186 / 7e-59 AT2G11890 198 / 4e-64 adenylate cyclases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198200 [exp] 295 / 3e-102 AT2G11890 176 / 1e-55 adenylate cyclases (.1.2) Potri.T125606 [exp] 295 / 4e-102 AT2G11890 175 / 1e-55 adenylate cyclases (.1.2) Potri.018G121300 [exp] 206 / 5e-67 AT2G11890 218 / 1e-72 adenylate cyclases (.1.2) Potri.006G062000 [exp] 191 / 6e-61 AT2G11890 212 / 8e-70 adenylate cyclases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF01928 [flax] [poplar] CYTH CYTH domain
Representative CDS sequence Show only first row Show all	>Lus10002992 pacid=23166282 polypeptide=Lus10002992 locus=Lus10002992.g ID=Lus10002992.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTCAGTAGACAGACTATCACCAGCCCTCCCCCCTTGAAGAAATTCCCCACAAATCTGAGTCCGACGAGGTATCTCCCCTTCAAAACCTTTT GTACAGCCAAGGTGTTCAACGAAATGGAAGTGGAGGTGAAACTTCGTCTCCCAGACGCCAGCTCGCACAATCGTCTCTCCGCCGTCCTCTCCCCCTACAG GACCAAAACGCTATCCCAAGAAAACATATTCTTCGACACCGCCGACTCCCACCTCGCCTCCAACCTCGCGGCCCTGCGGATCCGCTTCTACAACGTCGAT TCCAGCTGCATTTTGTCCCTCAAGGCCAAGCCCGTCCTCGCCGACGGAATCAGCCGAGTGTCGGAGCAGGAAGAGCCTCTAGACCCTCAATTGGGGCGAC TGTGTGTGGGCGAGCCACGGCGGTTAATGGGTTTGCGGGATGGATCGAATATTATGAAGAGAGTTAGAGAGGAGTATGGGGTGGTTGAAGAAGGGGTGTT AATTTGTCTTGGCGGGTTTAGGAATGTGAGGCAGGTGTTTGAGTGGAAAGGTTTGATCTTGGAGCTTGATGAGACCTTATATGATTTTGGGACCAGTTAT GAGGTTGAGTGTGAAAGCAGTGAACCTGTCAGGGACAAGAAGCTGATTGAGCAACTGTTGCAAGAAAATCGGATCCAGTTTTCTTACTCCACAGCCAACA AATTCGCAGTTTTTCGATCTGGGAAGTTGCCTTCATAG
AA sequence Show only first row Show all	>Lus10002992 pacid=23166282 polypeptide=Lus10002992 locus=Lus10002992.g ID=Lus10002992.BGIv1.0 annot-version=v1.0 MAFFSRQTITSPPPLKKFPTNLSPTRYLPFKTFCTAKVFNEMEVEVKLRLPDASSHNRLSAVLSPYRTKTLSQENIFFDTADSHLASNLAALRIRFYNVD SSCILSLKAKPVLADGISRVSEQEEPLDPQLGRLCVGEPRRLMGLRDGSNIMKRVREEYGVVEEGVLICLGGFRNVRQVFEWKGLILELDETLYDFGTSY EVECESSEPVRDKKLIEQLLQENRIQFSYSTANKFAVFRSGKLPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11890			adenylate cyclases (.1.2)		Lus10002992 [exp]	0	1
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	3.7	0.9032
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	7.7	0.8642
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	9.4	0.8822
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	9.8	0.8660
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	10.5	0.8910
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10021901 [exp]	12.4	0.8643
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	13.9	0.8813
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10043286 [exp]	15.0	0.8551
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	15.9	0.8865
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	19.7	0.8818

Compare expression of checked genes

Lus10002992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.