Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40860 884 / 0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT4G31750 176 / 1e-49 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 176 / 1e-48 Protein phosphatase 2C family protein (.1) AT5G10740 165 / 2e-45 Protein phosphatase 2C family protein (.1) AT5G53140 166 / 3e-45 Protein phosphatase 2C family protein (.1) AT1G43900 159 / 6e-43 Protein phosphatase 2C family protein (.1) AT2G25620 152 / 2e-40 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G62260 148 / 4e-39 Protein phosphatase 2C family protein (.1.2) AT1G48040 146 / 3e-38 Protein phosphatase 2C family protein (.1) AT1G07160 144 / 8e-38 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024474 [exp] 588 / 0 AT2G40860 404 / 1e-137 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Lus10024475 [exp] 496 / 1e-173 AT2G40860 344 / 8e-115 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Lus10020104 [exp] 173 / 9e-49 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 169 / 1e-47 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 166 / 1e-46 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 166 / 1e-46 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 168 / 4e-46 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 162 / 1e-44 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 154 / 7e-40 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G030800 [exp] 966 / 0 AT2G40860 921 / 0.0 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) Potri.006G267600 [exp] 174 / 2e-49 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 173 / 6e-49 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.012G002100 [exp] 169 / 9e-47 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 168 / 2e-46 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 160 / 3e-44 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G186001 [exp] 154 / 2e-42 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.018G115100 [exp] 155 / 9e-42 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 155 / 1e-41 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 155 / 2e-41 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10002993 pacid=23166283 polypeptide=Lus10002993 locus=Lus10002993.g ID=Lus10002993.BGIv1.0 annot-version=v1.0 ATGGGTTTGCAGATTTTGGAGCCAAACTCTTGTATTAGAGGATGCTGCAGCAGCGATTCAATTCCGCTTCATCTACCAACTTCTTCTTACACTCTCCTAT CTCCTATTGCCAGAGGAGCTGAGAGCGTGGTATATGAAGCAATCTTGAACGGTGTTAAAGTTGCTGTGAAGAAACCTATCTTGTCTACTTCTGATCACAT TGATAAGTTCCACAAAGAGCTGCAACTATTGTGTACACTTGACCATCCAGGGATATCGAGGTTGGTTGCTGCTCATGCAAAGCCTCCCAATTACATGTTC TTTTTCGAACTATTTGAATACGGAAGTCTGGCTCATAAATTGCATGCTCAAGAGTGGAATCCAAATATTTGTCAGGCTCTTGTGATTGCTATCCACCTTT CAAAGGCTTTGCTATATCTTCATGACCTTGGGATTGTGCATAGGGATGTGAAACCTGCAAACATGCTTCTAGATGAGAACCTTTATCCCCACCTTGCCGA CTTTGGCCTGGCAGAGTACAAGAATAACCTTAAGCAAGTCACTTTAGACAACTGGAGATCTTCGGGGAAGCCTACTGGTGGGTTTCATAAAAAGAATATG GTTGGTACACTTATTTATATGGCCCCTGAAGTATTGAGGAAGGAGGTTCAGACTGAGAAATCAGATGTTTATAGCTTTGGGATATCCATCAACGAGCTTC TTACTGGTGTCGTCCCGTATACTGATCTTCGTGCAGAGGCTCAAGCCCACACTGTCTTGGAAATGAACTATACGGAGCAGCAACTTACAGCCGCTGTGGT ATCTGGTAAATTGAGACCTGCTCTTGCAACTTCTGAGTCAGGTGCATCACCAAGTCTGCTTTTTTTAATACAGAGATGCTGGGATGACAATCCTGATCGT AGACCTTCTTTTGATGAAATTGTTGTAGAACTAGACAGAATGATAGGTCAGAAGCTGGTCCAAGCGAACCATGTCTGTGATATGGCTTCTGATTCTACCA GGGATAAAGCGAAAGGCACCATAATGAACCCAGATGCTATTAACTGGTCCAATCAAGGAGAAAGAGTGTTAAAGGGAACCTCTTTTACATGCACTTCAGG TTTAGCAAATTGGATTGATTCCAGAACCAGTTCGTTGGAGTATCATCCAGTGCTTTCGTTGGGATCTTTTGCTTCTCGTGGAAGAAGGGAGACTATGGAG GATACTCATTTTATGATGCCCAACTTCTGCAATGAAAAGTACATCCATGTTTTTGGTATCTTTGATGGCCATAGAGGTGGAGCAGCAGCTGAATTTGCAG CTAAAGCTCTGCCAATCTATTTTCATAATCTAGGTTTGACAAACAGCCCTATAGATGCATTGTCCAAGTCATTTGTCGAAACAGATGTTGCATTTAGGAA GGAACTGGATTCCCATCGCAGCTCAAGAAGTATTACAAAGAAAAATTGGCATCCTGGTTGCACTGCTATTGGTTGTTTGATCGTTGGAAATAGACTTTTG GTTGCAAATGCTGGTGATTGCAGGGCAGTGTTGTGTCGAGCTGGTAATGCATTTCCTCTGACTGAGGATCATGTTGCGAGTAATCTTAAAGAGAGGGAAC GAGTTGTTAGTGCCGGTGGGGAAGTGAAATGGCAAGTGGATACATGGAGGGTTGGTCCTGCTGCTCTTCAAGTTACTCGATCCATTGGTGACGACGATCT GAAGCCTGCTGTAACTGCAGAACCAGAAGTGATAGAAACGATTCTGTCGGAAGAGGATGAGTTTCTTGTGATGGCAAGTGACGGACTGTGGGATTTTGTG AAGAATGATGAGGTTGTGAGCATTATAAGGGACACAGTCAAAGAGCCGACAATGTGCTCCAAGAGATTAGCAACAGAAGCTGCAGAGAGAGGCAGCAATG ATAACATTACAGTCATTGTTGTATTCCTGCGACCGGTGTCTACAGCAGAGCGAGTTTACTAG
AA sequence Show only first row Show all	>Lus10002993 pacid=23166283 polypeptide=Lus10002993 locus=Lus10002993.g ID=Lus10002993.BGIv1.0 annot-version=v1.0 MGLQILEPNSCIRGCCSSDSIPLHLPTSSYTLLSPIARGAESVVYEAILNGVKVAVKKPILSTSDHIDKFHKELQLLCTLDHPGISRLVAAHAKPPNYMF FFELFEYGSLAHKLHAQEWNPNICQALVIAIHLSKALLYLHDLGIVHRDVKPANMLLDENLYPHLADFGLAEYKNNLKQVTLDNWRSSGKPTGGFHKKNM VGTLIYMAPEVLRKEVQTEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVVSGKLRPALATSESGASPSLLFLIQRCWDDNPDR RPSFDEIVVELDRMIGQKLVQANHVCDMASDSTRDKAKGTIMNPDAINWSNQGERVLKGTSFTCTSGLANWIDSRTSSLEYHPVLSLGSFASRGRRETME DTHFMMPNFCNEKYIHVFGIFDGHRGGAAAEFAAKALPIYFHNLGLTNSPIDALSKSFVETDVAFRKELDSHRSSRSITKKNWHPGCTAIGCLIVGNRLL VANAGDCRAVLCRAGNAFPLTEDHVASNLKERERVVSAGGEVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEVIETILSEEDEFLVMASDGLWDFV KNDEVVSIIRDTVKEPTMCSKRLATEAAERGSNDNITVIVVFLRPVSTAERVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	0	1
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10034342 [exp]	1.0	0.8707
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	2.0	0.8409
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	3.2	0.8701
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	6.0	0.8605
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	11.8	0.7935
AT4G02720			unknown protein		Lus10022052 [exp]	12.2	0.8273
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	17.3	0.7980
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10015077 [exp]	19.1	0.8044
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	25.8	0.8182
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	27.2	0.8037

Compare expression of checked genes

Lus10002993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.