Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10830 365 / 8e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G22530 331 / 2e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G61210 290 / 6e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G55450 285 / 2e-96 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G54150 285 / 2e-96 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G41380 207 / 2e-66 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024476 [exp] 513 / 0 AT5G10830 370 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001155 [exp] 196 / 6e-62 AT2G41380 330 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G103200 [exp] 397 / 3e-141 AT5G10830 376 / 5e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G066200 [exp] 329 / 2e-114 AT5G10830 339 / 2e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G101800 [exp] 321 / 3e-111 AT4G22530 331 / 3e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G067500 [exp] 315 / 6e-109 AT5G10830 326 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103400 [exp] 310 / 6e-107 AT4G22530 317 / 1e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G042200 [exp] 191 / 4e-60 AT2G41380 342 / 1e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G039051 [exp] 164 / 4e-50 AT2G41380 272 / 2e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10002994 pacid=23166278 polypeptide=Lus10002994 locus=Lus10002994.g ID=Lus10002994.BGIv1.0 annot-version=v1.0 ATGGCTGGGCTATTCGACAAGCAATCGGATCTGTACCTGGACGCCAGACCCACTTACCCATCGGAATGGTACTCCATGCTCGCCTCTCAATCCCTCCGCC ACTCTCTTGCTTGGGACGTCGGCACCGGCAACGGCCAGGCCGCCATCGGCGTGGCAGAGCACTACGATCAAGTGATCGGAACAGACTCCAGCTCAGCCCA GCTCAGCCGCGCAATCCCGCACCCGAGAGTCCAATACATCCACACTCCAGCCTCTCTACCGGACGACGAGCTCGTCGCTCTCGTCGGGGGCGAGAACTCG GTGGATCTGGTGACGGTGGCGCAGGCCGTGCACTGGTTCGACCTCCCAAGGTTCTACTCCGTTGTGAGCAGGGTGCTGAGGAAGCCCGGCGGAGTAATCG CGGTGTGGTGCTACAACGATCTGGTGGTGAGCCCAGAGTTCGACTCAGTGTGCAAGAAATTCCACGACACTACGCTGCCGTTTTGGCATCCGGATATCCG GCACGTGTTCGAGGGTTACCGGAATCTCCCTTTCCCTTTCAAAGCGGTGGGAGGAGGGCGGGCATCTCCGGAGGAGGTGGAAATCCCGAAGGAGATGTCG ATTGAAGGAGTGGTGAAGATGATGCAATCGTGGTCCGTCGTGATTACGGCGAGGGATCGAGGGGTGGAATTGCTGCCGGGAAGTGTAGTGAAGGAAATGG AGATTGCTTGGGGCGGGCCGGGTTTGGTGAAGTCCACTGTTTACAAGGCCTTTATGCTCGTCGGTAGGGTCAACAACCCCTGA
AA sequence Show only first row Show all	>Lus10002994 pacid=23166278 polypeptide=Lus10002994 locus=Lus10002994.g ID=Lus10002994.BGIv1.0 annot-version=v1.0 MAGLFDKQSDLYLDARPTYPSEWYSMLASQSLRHSLAWDVGTGNGQAAIGVAEHYDQVIGTDSSSAQLSRAIPHPRVQYIHTPASLPDDELVALVGGENS VDLVTVAQAVHWFDLPRFYSVVSRVLRKPGGVIAVWCYNDLVVSPEFDSVCKKFHDTTLPFWHPDIRHVFEGYRNLPFPFKAVGGGRASPEEVEIPKEMS IEGVVKMMQSWSVVITARDRGVELLPGSVVKEMEIAWGGPGLVKSTVYKAFMLVGRVNNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10002994 [exp]	0	1
AT5G47390	MYB		myb-like transcription factor ...		Lus10004248 [exp]	1.0	0.9428
					Lus10018472 [exp]	7.4	0.8945
AT2G17990			unknown protein		Lus10041920 [exp]	7.7	0.9029
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	10.8	0.9086
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10022761 [exp]	13.0	0.8770
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	16.6	0.9018
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	16.6	0.9018
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10011837 [exp]	19.0	0.8556
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	21.2	0.8966
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	21.4	0.9015

Compare expression of checked genes

Lus10002994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.