Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 515 / 1e-172 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 509 / 2e-170 ARA12 Subtilase family protein (.1) AT2G05920 508 / 4e-170 Subtilase family protein (.1) AT3G14240 506 / 4e-169 Subtilase family protein (.1) AT4G34980 485 / 4e-161 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 480 / 6e-159 Subtilase family protein (.1) AT1G01900 453 / 8e-149 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 448 / 8e-147 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 445 / 2e-145 ATSBT1.3 subtilase 1.3 (.1) AT5G59810 444 / 6e-145 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007045 [exp] 834 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007046 [exp] 769 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006702 [exp] 757 / 0 AT1G04110 596 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006704 [exp] 755 / 0 AT1G04110 594 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10029575 [exp] 697 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 696 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10007044 [exp] 695 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10002242 [exp] 691 / 0 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 681 / 0 AT5G67360 567 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118800 [exp] 891 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 767 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 739 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 733 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 725 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G256300 [exp] 546 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 538 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.006G141200 [exp] 498 / 4e-166 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 492 / 1e-163 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 491 / 2e-163 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10002995 pacid=23166279 polypeptide=Lus10002995 locus=Lus10002995.g ID=Lus10002995.BGIv1.0 annot-version=v1.0 ATGGCTACTATCATTTCTTCTTTCCTCCTACTAATTTCCTTCTTGCTCCTCACCATTGCTCAAACCGAAGCAAACACTGGTCTGCAAACCTACATTGTAC ACGTCAGCCAACCAGAAGGCAGAGTCGAGGTTGGAGACAGAGAGGATTGGTACCGTTCATTCCTCCCAACATTAATGTCGGAGGAGGACGAGGTCGACCG TCTCCTCTATGCTTACCATGAGGTTGTATCTGGATTCTCTGCCAGATTAACACCAGAGGAAGTGAAAGCCATGGAAGACAATAACAACCACTTCATATCA GCACGACCCGAAAAATCGCTCAAGCGACACACCACACACAGTCCGAAATTCCTTGGCCTGCAACAACAACTCGGGACGTTCTGGTCACAAGATGCAAACT TTGGAGAAGGGGTGATCGTCGGTGTACTCGACGGCGGGGTGTTACCTTCACATCCTTCATTCAGCGGAGAAGGAATGCCACCTCCCCCGACCAAATGGAG AGGGAAATGCGAGTTCAACTCGTCCTCATTGTGTAACAACAAGCTCATTGGTGCAAGGTCGTTCAACGTTGCAGCAAACGCCCGAAATAGTTCGATTAAT GTATCCGGTCCTCCGTTGGATATCGACGGTCACGGCACTCACACGGCTGGTACAGCTGCTGGTGCATTCGTGAGAAATGCTGAGGTGTTAGGGAACGCCA GAGGGACAGCATCCGGGATAGCACCTTCTGCTCATCTGGCCATTTACATGGTCTGCTATCCTTTTGAAAACGAGGACTGTGCCGAGAGTGACATCCTTGC CGGGTTGGATGCTGCTATTCAAGATGGAGTGGATGTGCTGTCACTCTCCCTGGGACTTGACCCTGGAACGGATTTTTTCGACGATGCTGTCGCTGTGGGA ACGTTTTCTGCAGTTGAGAAAGGGATATTCGTGAGCACTTCTGCTGGAAATGCAGGGCCTTTCAATTCCACATTGTCGAATGAAGCTCCTTGGTTGTTAA CTGTTGGAGCGAGCACCTTAGACAGGAAGATTGTGGCCGCTGCAAAGCTTGGAAATGGTGCAGAATTTGATGGTGAATCCACTTTCCAGCCCAAGGATCA CCCCAGTTCCAAACAACTTCTGCCTCTCGTCTTTTCAGGTACTGTAGGACGCCTGTCGAATTCTTCGTTTTGCGGGGAAGGATCGCTTGACGGTGCTGAT GTGAAGGGAAAAATTGTGGTGTGTGAGAGAGGAGGTGGCGTGGGAAGACTTGCAAAGGGCCAAGTGGTGAAAGATGCAGGAGGTGCAGCCATGATTCTGG TGAATATACAGTCTGATGGTTTCAGTGTTATATCCGATCTTCATGTTCTTCCAGCTACTCACGTCAGCTTTGCCGACGGGGAGAAGATCAAGGCTTACTT AAACTCGACGACATCTCCGACTGCGATGATTGTATTCAAAGGAACCGTCCAAGGAGACTCATCATCAGCTCCAGCCGTAGTTTCATTCTCGTCGAGGGGG CCTACAACACAGAGCAAAGGGATTCTTAAACCGGACATTATAGGTCCAGGAGTAAGCATTGTAGCAGCATGGCCATTCTCTCTAGAAAATAGCACAGTTG TAGCACCAACGTTCAACACAATGTCTGGCACATCAATGTCATGCCCACATCTAGCTGGAGTAGCAGCTTTGCTCAAAAGCTCACACCCGTCCTGGTCACC TGCAGCCATAAAATCTGCCATGATGACCACGGCTGATGTCCTGAACATGGCAGGGAAGCCGATTGTAGACGAAAAATATCAACCTGCGGATGTTTTTGCC ACTGGCTCAGGCCATGTGAACCCAACAAAGGCAAACGACCCGGGTTTGATATACGACATCAAGCCTGAAGACTACATATCATTTCTGTGTGGGCTAGGAT ACACAGACCAGCAAGTACAAAAGATCGTTCGGAGAGGAATTAAATGTGGAGAGAACGGCAAGTTAGCGGGCGGGCAGCTCAACTATCCTTCATTCTCGGT CACACTTGGACATTCGCAGACGTTCAGCAGGATTGTGACCAATGTTGGTGCAGCAAGTTCAGTTTATGCTGCGAGGATAAATCCTCCTTCAGGAGTAATT GTCACAGTCAGGCCTTCAATCCTCAAATTCTCAGGGTTGAATCAAAAGGCTACGTATGCTGTCACATTTATGCGCACAACAAACGGCAGCACAACTGTGT CATTTGCTCAGGGAGATATAACGTGGACTTCTGATAAGTATCGTGTCAGGAGTCCAGTATCTGTTACATTCCAGTAA
AA sequence Show only first row Show all	>Lus10002995 pacid=23166279 polypeptide=Lus10002995 locus=Lus10002995.g ID=Lus10002995.BGIv1.0 annot-version=v1.0 MATIISSFLLLISFLLLTIAQTEANTGLQTYIVHVSQPEGRVEVGDREDWYRSFLPTLMSEEDEVDRLLYAYHEVVSGFSARLTPEEVKAMEDNNNHFIS ARPEKSLKRHTTHSPKFLGLQQQLGTFWSQDANFGEGVIVGVLDGGVLPSHPSFSGEGMPPPPTKWRGKCEFNSSSLCNNKLIGARSFNVAANARNSSIN VSGPPLDIDGHGTHTAGTAAGAFVRNAEVLGNARGTASGIAPSAHLAIYMVCYPFENEDCAESDILAGLDAAIQDGVDVLSLSLGLDPGTDFFDDAVAVG TFSAVEKGIFVSTSAGNAGPFNSTLSNEAPWLLTVGASTLDRKIVAAAKLGNGAEFDGESTFQPKDHPSSKQLLPLVFSGTVGRLSNSSFCGEGSLDGAD VKGKIVVCERGGGVGRLAKGQVVKDAGGAAMILVNIQSDGFSVISDLHVLPATHVSFADGEKIKAYLNSTTSPTAMIVFKGTVQGDSSSAPAVVSFSSRG PTTQSKGILKPDIIGPGVSIVAAWPFSLENSTVVAPTFNTMSGTSMSCPHLAGVAALLKSSHPSWSPAAIKSAMMTTADVLNMAGKPIVDEKYQPADVFA TGSGHVNPTKANDPGLIYDIKPEDYISFLCGLGYTDQQVQKIVRRGIKCGENGKLAGGQLNYPSFSVTLGHSQTFSRIVTNVGAASSVYAARINPPSGVI VTVRPSILKFSGLNQKATYAVTFMRTTNGSTTVSFAQGDITWTSDKYRVRSPVSVTFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	0	1
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	1.4	0.9158
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	2.2	0.8543
AT2G27410	B3		Domain of unknown function (DU...		Lus10027272 [exp]	2.4	0.8754
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019719 [exp]	3.5	0.8343
AT5G13825			unknown protein		Lus10001690 [exp]	4.2	0.8754
AT1G34630			unknown protein		Lus10043395 [exp]	9.3	0.7712
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	12.8	0.8749
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10037644 [exp]	13.2	0.8247
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10003239 [exp]	19.3	0.7590
					Lus10005609 [exp]	20.1	0.8135

Compare expression of checked genes

Lus10002995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.