Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22120 1050 / 0 ERD (early-responsive to dehydration stress) family protein AT1G11960 1046 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 1012 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT3G21620 988 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G62320 986 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 958 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT4G02900 938 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 829 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 394 / 3e-126 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 341 / 5e-106 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024477 [exp] 1401 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10020032 [exp] 1149 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 1142 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10035300 [exp] 1032 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 1032 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 968 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 967 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 851 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 370 / 6e-117 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005900 [exp] 1088 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.011G009900 [exp] 1085 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 1070 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 1060 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 1040 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 1023 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.001G133800 [exp] 827 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 826 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 388 / 9e-124 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 378 / 3e-120 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10002996 pacid=23166276 polypeptide=Lus10002996 locus=Lus10002996.g ID=Lus10002996.BGIv1.0 annot-version=v1.0 ATGGCTACGCTGGGAGACATCTCAGTTTCGGCAGCCATAAATCTCTTCACCGCCTTCATTTTCCTCGTAGCATTTGCCTTGTTGAGACTTCAGCCCATCA ACGACCGTGTCTACTTCCCCAAATGGTACCTCAAGGGGCTCCGCCACACCCCGACCAACGCAGGAGGCGCTTTCGTGACCCGCTTTGTGAACTTGAACTT GGGGTCTTACCTCCGCTTCCTAAACTGGATGCCCGATGCCCTCAAGATGCCAGAGTCCGAGCTTATCCAACACGCTGGCCTCGACTCCGCTGTCTACCTC CGCATTTACCTAATGGGACTTAAGATCTTTGTTCCCATCTCATGTGTTGCCTGGGTGGTACTCGTCCCTCTTAACTGGACTAACCACACCATTGCGAAAG TCGCCAATGTCACTGCCAGCAACATCGATGAGCTCTCCATCTCCAATCTTCCACTTCAATCCAAACGATTTTGGGCGCATATACTGATGGCTTATGCATT CACGTTTTGGACATTGTTCATATTGTTCAAGGAGTATGCACAAGTTGCTTCAATGCGATTGCAGTTCCTTACCTCTGAGGAACGCCGCCCAGATAAATTC ACGGTACTGGTTAGAAATGTGCCATCGGAACCTCAAGAAACGATGAGTGAGCATGTGGAACACTTCTTTCTGGGGAACCATCCGGATCACTATCTCACCA ATCAGGTGGTATACGACGCGAACAAGCTTGCAAGTTTGGTGAAGAAGAAGAAAAAAATGCGCAACAAGCTTGATTTTTACCAACTTAAGATTTCCAGGAA ACCAGCAGTACGCCCTTCCTTTAAGACTGGTTTTCTGGGACTTCGGGGGAGGAAACTCGATGCTATTGATCATTACACTTCCATGGTCGACAAGTTATCA ATGCAAATAGGAGAAGAAATGGAAAGAGTTACCAAGGATCCAAACTGTATCGTGCCAGCGGCTTTTGTATCGTTCAAAACCAGATGGGGTGCAGCTGTAT GTGCACAGACTCAACAATCAAGAAATCCAACACTGTGGTTAACCGAATGGGCTCCAGAACCACGCGACGTATACTGGAACAACCTAACCATTCCTTATGT GTCGCTAAAAATCAGGAGGCTGGCAGTTGGGTTTGGATTCTTTCTCCTTACCTTCTTCTTCATGATCCCAATTGCGTTTGTGCAATCTCTGGCAAGCATT GAAGGCATTGAGAAGGCTACACCCTTTCTGAAACCCATGATCGAAACGAAACTGATAAAATCGGTTATCCAAGGAGTCCTACCAGGAATTGTGCTGAAAC TATTCCTCATCTTCCTACCAACAATACTGATGATCATGTCTAAACATGAAGGATTCATTTCTCTGTCCTCTCTAGAAAGGAGATCAGCAACCAGATACTA CATATTCAACATTGTCAATGTCTTCCTTGGGAGCATTATCACCGGAACTGCATTTGAGCAGCTCAATTCCTTTATGAAGCAATCAGCTGGCGAAATCCCA AAGACAATTGGAATGGCGATACCAATAAAAGCAACATTCTTCATCACCTACATAATGGTGGATGGGTGGGCTGGTGTGGCAGGGGAGATCTTAATGCTCA AGTCGTTGATAATCTTCCACTTGAAGAACTTTCTGGTGAAGACTGACAAGGATATGGAAGAGGCCATGGACCCAGGGAGCCTAGGATTTCACATAGGGGA GCCACGAATACAGTTCTACTTCTTGTTGGGGCTTGTGTACGCAACGGTCACGCCGGTGCTCCTCCCCTTCATCATAGTCTTCTTTGCATTTGCCTATGTC GTGTTCCGCCACCAGATTATAAACGTGTACAATCAGGCCTATGAGAGCGGCGCAGCATTTTGGCCAGCGGTTCACGGGCGTGTTCTTATAGCATTGGTGA TATCGCAGTTGCTGATGATGGGACTTTTGAGCACCAAGGGAGCTGTTCTTGCAACTCCGTTTCTCATCGCTCTTCCCGTGCTCACCCTTTGGTTCTACAA ATTCTGCAAGTCACGATACGAATCGGCATTTACTATATACCCGTTGCAGGAAGCGATGTTGAAGGACACATTGGATCGTGCGAGTGAGCCTGAGCTGAAC CTGAAAGCGTATCTGCAGGAGGCTTACGTGCATCCCATTTTTAAGAGCGCAGATGACTATGGTGATGATAATGAGAAAGAAGAGGAGGTGGTGGTGGATA TAGAGATGGGTGAGTCCAGTGATATAGAGATGGGGATAGTGCCTACAAAGCGCAAATCAAGGAGTAGAACTCCAGCTCCCACCATTGTAAGTAAAGAAAC AGCCAGATCCTCGCCCTTAGCGGCCGAGCTGACGAATTATGGGGAGGCCCTTCGGAATGATAAGGTGACACAAATTTGA
AA sequence Show only first row Show all	>Lus10002996 pacid=23166276 polypeptide=Lus10002996 locus=Lus10002996.g ID=Lus10002996.BGIv1.0 annot-version=v1.0 MATLGDISVSAAINLFTAFIFLVAFALLRLQPINDRVYFPKWYLKGLRHTPTNAGGAFVTRFVNLNLGSYLRFLNWMPDALKMPESELIQHAGLDSAVYL RIYLMGLKIFVPISCVAWVVLVPLNWTNHTIAKVANVTASNIDELSISNLPLQSKRFWAHILMAYAFTFWTLFILFKEYAQVASMRLQFLTSEERRPDKF TVLVRNVPSEPQETMSEHVEHFFLGNHPDHYLTNQVVYDANKLASLVKKKKKMRNKLDFYQLKISRKPAVRPSFKTGFLGLRGRKLDAIDHYTSMVDKLS MQIGEEMERVTKDPNCIVPAAFVSFKTRWGAAVCAQTQQSRNPTLWLTEWAPEPRDVYWNNLTIPYVSLKIRRLAVGFGFFLLTFFFMIPIAFVQSLASI EGIEKATPFLKPMIETKLIKSVIQGVLPGIVLKLFLIFLPTILMIMSKHEGFISLSSLERRSATRYYIFNIVNVFLGSIITGTAFEQLNSFMKQSAGEIP KTIGMAIPIKATFFITYIMVDGWAGVAGEILMLKSLIIFHLKNFLVKTDKDMEEAMDPGSLGFHIGEPRIQFYFLLGLVYATVTPVLLPFIIVFFAFAYV VFRHQIINVYNQAYESGAAFWPAVHGRVLIALVISQLLMMGLLSTKGAVLATPFLIALPVLTLWFYKFCKSRYESAFTIYPLQEAMLKDTLDRASEPELN LKAYLQEAYVHPIFKSADDYGDDNEKEEEVVVDIEMGESSDIEMGIVPTKRKSRSRTPAPTIVSKETARSSPLAAELTNYGEALRNDKVTQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22120			ERD (early-responsive to dehyd...		Lus10002996 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	3.9	0.8853
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10035332 [exp]	4.5	0.8734
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	4.5	0.8570
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	6.3	0.8534
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	7.9	0.8659
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	9.2	0.8539
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10011413 [exp]	14.1	0.8544
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	14.6	0.8613
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	15.6	0.8179
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10026996 [exp]	16.1	0.8468

Compare expression of checked genes

Lus10002996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.