Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22900 150 / 1e-42 Protein of unknown function (DUF1191) (.1) AT4G11950 150 / 2e-42 Protein of unknown function (DUF1191) (.1) AT1G62981 150 / 2e-42 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT3G08600 68 / 9e-13 Protein of unknown function (DUF1191) (.1) AT4G01140 63 / 4e-11 Protein of unknown function (DUF1191) (.1) AT4G23720 50 / 6e-07 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024479 [exp] 378 / 3e-131 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10014138 [exp] 209 / 2e-65 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 207 / 1e-64 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10006712 [exp] 201 / 2e-62 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 181 / 2e-55 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10014139 [exp] 181 / 3e-55 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 177 / 7e-53 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 64 / 3e-11 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10028743 [exp] 62 / 1e-10 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112800 [exp] 199 / 1e-61 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 190 / 5e-58 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 84 / 5e-18 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 79 / 1e-16 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 72 / 3e-14 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 71 / 9e-14 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 68 / 7e-13 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 65 / 1e-11 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10002998 pacid=23166273 polypeptide=Lus10002998 locus=Lus10002998.g ID=Lus10002998.BGIv1.0 annot-version=v1.0 ATGTCGCATCTTTACTCCTTCATCTTCTTAACCCTCCTGTCCCTATCATCACCATTGTCATCAACATCAACATCGACACCTGAAGCCCTGGATCTCTTAA TCAGGGACTCCACATTCAAGTCCTACGACAACACTACTACCAAAACAGGGGATATCCATAATGTCAACCTCCCGTCGAACCTTTCGGGCATCACTGCTCA TGCAGTTAGGTTCCGATGTGGCAGCCTCAGCCGATATGGCGCCCAAATCGACAGCTTCACCCTCAGACTAAGCAACAACAGCAACAACAGCCTCATTGTC TCCCCCTGCGCGGAGAGGGTGATGCTGATCACAACCAACTTTGGTCTCAATTGGTCATCCACTATTTATAACAACAACTTCCTCTCTGGCTATAAACTCA TCTCTCCAATTCTAGGCCTGACTGCATACGACACCGGATCCAATTCAAGCTACCCTTTTGAGATTGGAATCCGTTCTAGCCGCGGAAACCCCATCATCAC CGTCAATTTCAGCAACATACCAACTGATGATTATCATCTCAACAGTACTACCAGTTCTCCACTATGTGCCATATTTGGTAGAGATGGGAAAGTGAGCCTG ACACCACCAACTTCACCTCGACTATGTTCCTCAACAACCACCGGCCATTTTGGGTTGGTGGTGAAGGTTTTTGTGCCTCCGCCACCGAATCCATCACCGG CTGGAGAAGGAGATGATGAAGGAGATGAAGGAGGAGGAGGCAGAGCAGCAGCGTGGAAAGTGGCGGTTGGGAGCAGCATTGGAGGAGTGTTGGGGATAGT GTTGCTCGGGTTGCTAATGGTGGCCATGTTTGGTAAGGCGAAGAAGAAAGCGAAGATGGTGGAGTTGCAGAGGAAGGCGTATGAAGAGGAAGCTCTGCAG GTGTCCATGGTTGGACATGTTATAAGAGCTCCTCTGGCTCACGCACCGTTCCCACCATTGACAATGATCATCACTTCATGCCTAATTACATTAATCCTTC CTCTCGAACCAAAAAGTAATTAA
AA sequence Show only first row Show all	>Lus10002998 pacid=23166273 polypeptide=Lus10002998 locus=Lus10002998.g ID=Lus10002998.BGIv1.0 annot-version=v1.0 MSHLYSFIFLTLLSLSSPLSSTSTSTPEALDLLIRDSTFKSYDNTTTKTGDIHNVNLPSNLSGITAHAVRFRCGSLSRYGAQIDSFTLRLSNNSNNSLIV SPCAERVMLITTNFGLNWSSTIYNNNFLSGYKLISPILGLTAYDTGSNSSYPFEIGIRSSRGNPIITVNFSNIPTDDYHLNSTTSSPLCAIFGRDGKVSL TPPTSPRLCSSTTTGHFGLVVKVFVPPPPNPSPAGEGDDEGDEGGGGRAAAWKVAVGSSIGGVLGIVLLGLLMVAMFGKAKKKAKMVELQRKAYEEEALQ VSMVGHVIRAPLAHAPFPPLTMIITSCLITLILPLEPKSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11950			Protein of unknown function (D...		Lus10002998 [exp]	0	1
AT3G52480			unknown protein		Lus10004203 [exp]	7.5	0.9311
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	13.7	0.9174
AT5G06610			Protein of unknown function (D...		Lus10013534 [exp]	14.2	0.9237
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	16.6	0.9280
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	19.5	0.9071
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10028263 [exp]	20.2	0.9182
AT3G52480			unknown protein		Lus10029407 [exp]	21.2	0.9179
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	24.6	0.9168
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	25.7	0.9192
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008229 [exp]	26.7	0.9168

Compare expression of checked genes

Lus10002998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.