Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05490 573 / 0 CHR31 chromatin remodeling 31 (.1) AT3G24340 501 / 9e-159 CHR40 chromatin remodeling 40 (.1) AT5G20420 344 / 3e-100 CHR42 chromatin remodeling 42 (.1) AT3G42670 335 / 6e-97 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT2G16390 308 / 1e-89 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 291 / 3e-84 CHR34 chromatin remodeling 34 (.1) AT3G19210 152 / 3e-37 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G25170 131 / 1e-30 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 129 / 4e-30 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G63950 129 / 5e-30 CHR24 chromatin remodeling 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011033 [exp] 1733 / 0 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10040136 [exp] 698 / 0 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10001090 [exp] 345 / 1e-110 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1) Lus10040956 [exp] 328 / 3e-94 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 316 / 3e-90 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10041963 [exp] 308 / 2e-89 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 296 / 5e-84 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 286 / 4e-81 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10040137 [exp] 130 / 4e-35 AT1G05490 91 / 2e-22 chromatin remodeling 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050200 [exp] 666 / 0 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 345 / 3e-100 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.009G120700 [exp] 308 / 9e-90 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G159000 [exp] 246 / 9e-68 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 187 / 3e-51 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.013G048500 [exp] 179 / 2e-45 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 158 / 6e-39 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.006G262200 [exp] 134 / 1e-31 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 134 / 2e-31 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.001G123400 [exp] 125 / 1e-28 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003003 pacid=23176162 polypeptide=Lus10003003 locus=Lus10003003.g ID=Lus10003003.BGIv1.0 annot-version=v1.0 ATGGAGAGAGAAGAGTGCAATGAAGTGATTCTGATTGACGATTCCGAGTCGGAATCCGAACCAGAAGAGGTCAATGATGTGGAAAGAGTAGAAGAAACGG AAGAAGAAGAACTGGAAGAACAAAAGGAAGAAGAAGAGATTCAGATGATGGATGTGGATGAAGGAAGAATGCCAGAAGAAGTAATAGTAATCGAAGAAGA AGAAGAAGAAGAAGAGATTCAGACGATGGATGTGGATGAAGGAAAAATGCCAGAAAGATCAGTACCAGCAGGAGGAGAAATGGAAATGGAAAAGGAAGAA GTAAGAGTAGTGATAGAAGAAGAAGTACAACAAGATGAACAAAATGTTCAGATTGCAGCAGATAAGCCTGAGGTGAGTCCTGAGGAGTTGAGTAGTAGTT CAAGAGTTTCTGAAAGAACGGCCTGGGCTTGGAAAGAAGTTCAAATCTTTTCGAAACAGGAGGAGGAAGAGGAAGATCAGGCGGACAACAATGGTGATGA AATTAGCAATGCCGAGGCTCAAGGGGAGGATCAACAGACCGAGCAGGAGGAGATGAAACGCCTTTGGGACGAGTTTGAGTTAGCTCGAAAAGAGGAGGAA AAAACAAAACCAGTCCCTACTAAGAAGGCGGTGGTGAGTAATGGCTTCAATGGACGAGGAGCAAGAAAGCCAAAGGTTGGATTTGGTGGCTTGAGTTCCA AACCAGACATTGAAAGGAAAGTTGAAATCAACGGTTGTGATGATCCGTTAGTTGCAGAAGTTGCAAGAGATGAAGGGAAGGTAGAAGAAGAGGTTATTAC TGTTGAGGCTGCTGAAGAGAAGGATCAGGAACAATGCATGTTGAAACCGAGTTGGAAACCGTGTGGGAAACCAAAGAAGGTGTTTGAAGAGAGTGAAGTG GTGAACATACTTGCAGAGTCTGTACTGGGAGATGCAAAGTTGCCAGTGGCCGATGAGGAGGAGGAAGATAATGAGCCTCCAGCAGAGGTAAACGAGAATC AGCGACTGGTTGTAACGAGACGGATATGGGGTTGCGAAGAGGAGGCTAGTCCACCTGAGAAATCCGAACACGAGAAGGAGATGGAGGGTCTGTGGGAGGA ATTCGCATTAGCTCAATATGGGGATGAAGACAGCTCTAGTGTGATACAGGAAGATACGTCGCAATCCGAAGTCGACATCGATCCTAGTCGCTGTCGTCCG GGAGATCATCAACTGAAACTCGACGAAGAAATCGGTCTCATCTGCAGAATCTGTCACCATGTAGATTTGGAGATCAGATATCACGTAGCACCCTTTGCTG AGGAAAAGTACCGATATTCGAAGAAGGAAAGCTCAGAACATTGGGATAAAAAAATGCTCAACGAATTCTACGGTCAGGAGGATCCCGATAACTTCCACCG CAAGCTTCATCAGCAAGAAAAAGACGCTACAGTCTGGGATATAATGCCCAAGATACGAGAAGGCATGCACGAGCATCAACAAGAAGGTTTCGAGTTCCTG TGGAGGAACATCGGGGGAGACATTCGTCTCGCGAACTTGAAATCTCCAGCCGGAGAAGAAGCAAGCGGATGCATCATTTCCCACGCACCGGGTACGGGCA AAACTCGGTTAGCGATTCGGTTCCTCCAAACATACATGAAGCAGTTCCCTGAATGCAAGCCGATGATCATCGTCCCTTGCAGCATGCTAATCACTTGGGA AGCCGAATTCAAGACCCTGGGAGTTGAAACGCCTCGATTCGACCTCAACGATGCGAAGCTAACAGGTAAAGAAAGCCCCGCGGCCATGGGGTTACTCCGG GAGTATAGAGGGACTCAGACTGTGCGTTGGGTGAAGCTTTATTCATGGCAGAAGGATAGTGGGATCCTTTTGATGAGTTACAAGCTTTACGAGGAGCTCG TTGGTCGAGGCATGAAGAAGAAGAGGAACAAAACCGAATCGAGTAAGAGCAGCCGCCCGATCGATGAAAGAACGAAGCAAGTGCTCCTCGAGGTCCCGGG ATTGGTGATTCTCGACGAGGGACACAATGCGAGGAATCAAGATAGTCTTATATGGAGAGCGTTGTCGAATCTCACGACGAGGAAGCGCATCGTGCTGTCT GGAACTCCGTTCCAGAACAATTTTGACGAGTTCTTCAACATACTGTGGGTTGCTAGGCCGAATTTCGCCGAGAGCATCCCGTGCCGTGCGAATTGGGTTT CGAGCAAGAAGAAGCGTGTGACGGAAGTTAACGAAATGAGGGAGAAATGGCAGTCTTTTACGTGTCATTTGGGGAAAAAGACAAACGACGGGCGTGAAGT TAAGCAGCTCCAGGAGTTGAGAGCTTTCATCAACCCCTTTGTTCATACTTACAAAGGGGATATCTTGGACAAGAAGCTACCTGGATTACGTGACTCGGTT CTGATTCTGAAGCCGGCCGATTTCCAGCGAGGGCAGATAGCTCGTATTCAAGCAATGAGCCACACACTCGGATTGATGGAGAAGACTATTCAGTACTTCC ATTGGGAGCATGTTCTTTCGCTCGCCTCGGTTCATCCGTACCTGCTCTCAAACTGCACGGGTCCATATCAAACCGAATCGGTCAGCAAATCGATGCTGGA CCAGCTCAAGCTAACTCCTGAGGCCGGAGTGAAGACCAAGTTTCTGATGGAGCTGATCAAAATCTGCGAGATTATCGACGAGAAGGTGCTAGTGTTCAGC CAGTTCCTCGATCCGTTGAAAATGATCTCGGACCAGCTGGAGAAGCACCGGAACTGGATCGCCAACACCGACTTCCTCTACATGCGCGGTGAGCTAACCA GAACCGAGCGTCAGAAGATGATGAAGAGCTTCAACGACCCAGGAAGCAAAGCGAAGGTGCTCCTCGCGTCGACCAAGGCCTGCTCTGAAGGGATCAGTTT GATCGGTGCTTCGAGGGTGGTCTTGCTCGACGTGGTTTGGAATCCTTCGGTGGCTCGACAGGCTGTCAGCCGGGCTTACAGGCTGGGGCAGACCCGAGTT GTGCATGTGTACAACTTGATCACCTCCGGTACGATCGAGGAGGAGAAGTTTAAGAGGCAGGTGAAGAAGGATAAGCTTTCGGACATGGTTCTCTTCTCGG CGGAGAAATCAGCAGATTGTGGTGGTGGGAGAAGTAGGGAGTTGGGAGATCTGCCTGAGGATGAGAAGGATAAGGTTTTGGAGATGCTGCTTGAACGTGA GAATCTGAAAGGAATCTTCAAGGAGATCATTTACCAGCCGAAGGATTCGAAAGTCGAGGACGGATCAGTTCCTCCCGGGTTGATTGATCTCTAA
AA sequence Show only first row Show all	>Lus10003003 pacid=23176162 polypeptide=Lus10003003 locus=Lus10003003.g ID=Lus10003003.BGIv1.0 annot-version=v1.0 MEREECNEVILIDDSESESEPEEVNDVERVEETEEEELEEQKEEEEIQMMDVDEGRMPEEVIVIEEEEEEEEIQTMDVDEGKMPERSVPAGGEMEMEKEE VRVVIEEEVQQDEQNVQIAADKPEVSPEELSSSSRVSERTAWAWKEVQIFSKQEEEEEDQADNNGDEISNAEAQGEDQQTEQEEMKRLWDEFELARKEEE KTKPVPTKKAVVSNGFNGRGARKPKVGFGGLSSKPDIERKVEINGCDDPLVAEVARDEGKVEEEVITVEAAEEKDQEQCMLKPSWKPCGKPKKVFEESEV VNILAESVLGDAKLPVADEEEEDNEPPAEVNENQRLVVTRRIWGCEEEASPPEKSEHEKEMEGLWEEFALAQYGDEDSSSVIQEDTSQSEVDIDPSRCRP GDHQLKLDEEIGLICRICHHVDLEIRYHVAPFAEEKYRYSKKESSEHWDKKMLNEFYGQEDPDNFHRKLHQQEKDATVWDIMPKIREGMHEHQQEGFEFL WRNIGGDIRLANLKSPAGEEASGCIISHAPGTGKTRLAIRFLQTYMKQFPECKPMIIVPCSMLITWEAEFKTLGVETPRFDLNDAKLTGKESPAAMGLLR EYRGTQTVRWVKLYSWQKDSGILLMSYKLYEELVGRGMKKKRNKTESSKSSRPIDERTKQVLLEVPGLVILDEGHNARNQDSLIWRALSNLTTRKRIVLS GTPFQNNFDEFFNILWVARPNFAESIPCRANWVSSKKKRVTEVNEMREKWQSFTCHLGKKTNDGREVKQLQELRAFINPFVHTYKGDILDKKLPGLRDSV LILKPADFQRGQIARIQAMSHTLGLMEKTIQYFHWEHVLSLASVHPYLLSNCTGPYQTESVSKSMLDQLKLTPEAGVKTKFLMELIKICEIIDEKVLVFS QFLDPLKMISDQLEKHRNWIANTDFLYMRGELTRTERQKMMKSFNDPGSKAKVLLASTKACSEGISLIGASRVVLLDVVWNPSVARQAVSRAYRLGQTRV VHVYNLITSGTIEEEKFKRQVKKDKLSDMVLFSAEKSADCGGGRSRELGDLPEDEKDKVLEMLLERENLKGIFKEIIYQPKDSKVEDGSVPPGLIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10003003 [exp]	0	1
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	16.6	0.7483
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	34.4	0.7771
					Lus10000458 [exp]	45.1	0.7061
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	72.2	0.7465
AT1G02816			Protein of unknown function, D...		Lus10009855 [exp]	83.7	0.6614
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10032940 [exp]	84.7	0.6833
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10033236 [exp]	85.1	0.7291
AT1G44760			Adenine nucleotide alpha hydro...		Lus10029664 [exp]	91.5	0.7413
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	108.8	0.7411
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	140.3	0.6657

Compare expression of checked genes

Lus10003003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.