Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35190 358 / 5e-126 NSPN11, ATNPSN11, NPSN11 novel plant snare 11 (.1) AT3G17440 288 / 2e-98 ATNPSN13, NPSN13 novel plant snare 13 (.1.2) AT1G48240 283 / 4e-96 ATNPSN12 novel plant snare 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011034 [exp] 374 / 2e-132 AT2G35190 274 / 2e-93 novel plant snare 11 (.1) Lus10017116 [exp] 278 / 7e-94 AT3G17440 410 / 6e-146 novel plant snare 13 (.1.2) Lus10018338 [exp] 277 / 8e-93 AT3G17440 375 / 2e-131 novel plant snare 13 (.1.2) Lus10000163 [exp] 59 / 2e-11 AT3G17440 103 / 3e-29 novel plant snare 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085200 [exp] 384 / 3e-136 AT2G35190 391 / 6e-139 novel plant snare 11 (.1) Potri.001G149200 [exp] 380 / 8e-135 AT2G35190 389 / 4e-138 novel plant snare 11 (.1) Potri.010G001900 [exp] 288 / 4e-98 AT3G17440 429 / 8e-154 novel plant snare 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF03908 [flax] [poplar] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Lus10003004 pacid=23176159 polypeptide=Lus10003004 locus=Lus10003004.g ID=Lus10003004.BGIv1.0 annot-version=v1.0 ATGGATGATTTATCGCATATCAGTGAAGAAGTAGCTGAAATTGATGGACAAATTGCAGATATCTTTCGAGCCTTATCGAATGGGTTTCAAAAACTGGAAA AGGTTAAAGATGCCAACAGAAGAAGCAGACAATTGGAAGAGCTTACAGACAAAATGAGAGAATGTAAAAGGCTTATCAAAGAATTTGACAAAGAAGTGAA GAACCTTGAAAGGAGAAATGATGCTATGATAAATAGAACCCTAAATGAGAAGAAGCAATCAATGATAAAAGAGTTGAATTCTTATGTTGCATTAAAGAAG CAATATGCAGTAAATGTTGACAAGAAGAGAGTTGATCTATTTGATGGGCCAAGTGAGGGGTTTCATGATGATAATGTTATGTTAGCTTCATCAATGACAA ATGAACAATTGATGGACCATGGCAATCACATGATGGATGAGACTGATGATGCACTTGAAAGGGGCAAAAAGATTGTTCAAGAAACTATCGATGTCGGGAC AGAGACCGCAACCAGTCTCAAGACTCAAACAGAACAAATGAGCAGGGTAGTTAATGAGTTAGACTCGATCCACTTCTCGATGAAGAGGGCTTCTAAATTA GCGAAGGAAATTGGTAGACAATTTGCAACTGACAAGATGATTATGACAATGCTTTTCCTCATCGTCATTGGAATTGTCACAATCTTCATTATTAAGCTCG TCAATCCAAATAACAAAACCATTCAAGACATTTCCGGGCTAGCTCCACCAGCAATGGCTCGCAAGCTACTCTGGCATAGTCACTGA
AA sequence Show only first row Show all	>Lus10003004 pacid=23176159 polypeptide=Lus10003004 locus=Lus10003004.g ID=Lus10003004.BGIv1.0 annot-version=v1.0 MDDLSHISEEVAEIDGQIADIFRALSNGFQKLEKVKDANRRSRQLEELTDKMRECKRLIKEFDKEVKNLERRNDAMINRTLNEKKQSMIKELNSYVALKK QYAVNVDKKRVDLFDGPSEGFHDDNVMLASSMTNEQLMDHGNHMMDETDDALERGKKIVQETIDVGTETATSLKTQTEQMSRVVNELDSIHFSMKRASKL AKEIGRQFATDKMIMTMLFLIVIGIVTIFIIKLVNPNNKTIQDISGLAPPAMARKLLWHSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	0	1
					Lus10032968 [exp]	6.9	0.9990
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	9.8	0.9983
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	12.0	0.9983
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	13.3	0.9505
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	13.4	0.9461
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	13.9	0.9983
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	13.9	0.9203
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	14.4	0.9746
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	15.5	0.9983
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	15.7	0.9387

Compare expression of checked genes

Lus10003004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.