Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17090 709 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 527 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G15210 401 / 1e-135 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 390 / 8e-131 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 378 / 2e-125 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 375 / 5e-125 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 325 / 2e-103 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 286 / 8e-89 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 271 / 8e-85 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011035 [exp] 1015 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 731 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 682 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 524 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 504 / 8e-175 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039701 [exp] 407 / 5e-136 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 395 / 3e-132 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10004398 [exp] 391 / 3e-131 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039702 [exp] 382 / 6e-128 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148900 [exp] 763 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 749 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 552 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 539 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 399 / 2e-133 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 390 / 2e-130 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G143500 [exp] 387 / 6e-129 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 372 / 2e-123 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.002G159300 [exp] 357 / 2e-115 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 354 / 6e-115 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10003005 pacid=23176146 polypeptide=Lus10003005 locus=Lus10003005.g ID=Lus10003005.BGIv1.0 annot-version=v1.0 ATGGCACTAACACTACGCTCGCCAACATCCTTCATCAATCTAAAGGACACCACTAGATCCCTACTAAGAACAGACATTGTCGGCTCGATCTGCTTCCCGC AGATCAAGCCAGGGCGCGGCCAAGTAGTTGGCCGGGTCCAAGCTCACAACGGCCTAATTCTATCAAGTGAGGAGAAGCTGCACCTGCTGTCGATCCCGCA CGACAACAACAGTGCGAAGGTGCCGGTGTTCGTGATGCTACCGCTCGACACGGTGACACACGGTGGGCACTTGAACAAGCCTAAGCTGATGAACGCTAGC TTGATGGCTTTGAAGAGGGCCGGAGTGGAAGGTGTTATGGTTGATGCTTGGTGGGGGTTGGTTGAGAAAGAAGGGCCATTGAAGTATAACTGGGAAGGCT ATGCTGAGCTTGTGCAAATGGTCAAGCGCCATGGGTTGAAGATTCAGATGGTCATGTCGTTTCATCAGTGTGGTGGGAATGTTGGTGATTCTTGCAGGAA CCCTGAGTACATCTCATTAGGATGCGACGCTTTGGCTGTGCTGAGAGGAAGAACACCGATTCAAGTTTACACGGATTACATGAGAAGCTTCCGCAACAGG TTCAGAGATTACCTTGGAAATGTCATTGTGGAAGTACAAGTAGGCATGGGACCTTGTGGAGAGCTGAGATACCCAGCATATCCAGAGAGCAATGGAACAT GGAAGTTCCCCGGAATCGGGGAATTCCAGTGCTATGACAAGTATATGATAGCTTCACTCAAAGCTTCAGCAAACGAACTAGGAAGGCCAGACTGGGGTAT AGGAGGGCCGCATGATTCTGGACAGTACAATCAGTTCCCGGAAGACACTGGGTTTTTCAAGTGGGATGGTACATGGAACACGGATTACGGTCGGTTCTTT CTAGAGTGGCATTCAGAGAAGCTAATACGACATGGAAACGACATTTTAGCAGCTGGGAAGGGGATATTCAAGGGAACTGGAGCAAAGCTATCGGGAAAAG TTGCTGGAATCCACTGGCATTACAAGACTAGGTCCCATGCAGCAGAGCTCACAGCAGGGTACTACAACACTAGATACCGCGACGGGTACCTACCCATATC GCGGATCTTCAGCAGGCACGGAGTCGTGCTGAACTTCACGTGCATGGAGATGAGGGACGGGGAGCAGCCCGAGTACGCCAGCTGCTCGCCTCAGGGGTTG GTGTGGCAGGTTCAGATGGCAACAAAAGCTGCCGGGATTGAACTTGCTGGTGAGAATGCATTGGAAAGGTATGATGCTGATGCTTACAGACAGGTTATGG CGACAAGTGGAGCTGAGCTAGGGAATGGGTTGACTGCTTTTACTTACTTGAGGATGAATAAGAGGCTGTTTGAAGAAGGGAACTGGAGACACTTGGCTGA GTTTGTGAAGAGCATGTCTGAAGGTGTGGAGAATGGGCTGGATTCAGCAACACAGAGAAGTGATCTGTTCATTGGGTTTGTTACTGATAAGAATTTCAAG GAGATGGGTGATGTTCTGCTTGTGTAA
AA sequence Show only first row Show all	>Lus10003005 pacid=23176146 polypeptide=Lus10003005 locus=Lus10003005.g ID=Lus10003005.BGIv1.0 annot-version=v1.0 MALTLRSPTSFINLKDTTRSLLRTDIVGSICFPQIKPGRGQVVGRVQAHNGLILSSEEKLHLLSIPHDNNSAKVPVFVMLPLDTVTHGGHLNKPKLMNAS LMALKRAGVEGVMVDAWWGLVEKEGPLKYNWEGYAELVQMVKRHGLKIQMVMSFHQCGGNVGDSCRNPEYISLGCDALAVLRGRTPIQVYTDYMRSFRNR FRDYLGNVIVEVQVGMGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMIASLKASANELGRPDWGIGGPHDSGQYNQFPEDTGFFKWDGTWNTDYGRFF LEWHSEKLIRHGNDILAAGKGIFKGTGAKLSGKVAGIHWHYKTRSHAAELTAGYYNTRYRDGYLPISRIFSRHGVVLNFTCMEMRDGEQPEYASCSPQGL VWQVQMATKAAGIELAGENALERYDADAYRQVMATSGAELGNGLTAFTYLRMNKRLFEEGNWRHLAEFVKSMSEGVENGLDSATQRSDLFIGFVTDKNFK EMGDVLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	0	1
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	1.4	0.9242
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	2.8	0.9001
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	4.2	0.8554
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	5.3	0.8843
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	5.5	0.8553
AT2G39300			unknown protein		Lus10014034 [exp]	6.7	0.8068
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	6.9	0.8875
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	8.4	0.8635
AT1G11340			S-locus lectin protein kinase ...		Lus10007611 [exp]	8.5	0.8550
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	9.4	0.8622

Compare expression of checked genes

Lus10003005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.