Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32400 272 / 5e-92 TOM2A tobamovirus multiplication 2A (.1.2.3) AT2G20740 87 / 7e-21 Tetraspanin family protein (.1.2.3) AT4G28770 79 / 5e-17 Tetraspanin family protein (.1.2) AT2G20230 76 / 3e-16 Tetraspanin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011042 [exp] 409 / 4e-146 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10030939 [exp] 370 / 2e-130 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 245 / 1e-82 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3) Lus10039817 [exp] 97 / 7e-24 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10018584 [exp] 94 / 3e-23 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10011910 [exp] 94 / 1e-22 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1) Lus10022841 [exp] 94 / 1e-22 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146100 [exp] 319 / 2e-110 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.003G087800 [exp] 318 / 6e-110 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.013G134200 [exp] 95 / 2e-23 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.019G101800 [exp] 88 / 5e-21 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.002G253500 [exp] 85 / 2e-19 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.011G050900 [exp] 76 / 2e-16 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 73 / 2e-15 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10003011 pacid=23176149 polypeptide=Lus10003011 locus=Lus10003011.g ID=Lus10003011.BGIv1.0 annot-version=v1.0 ATGGCTTGCAGGGGGTTCTGGGAGTGCTTATTGAAGCTGCTCAACTTCTTGTTAGCCGTTGCTGGTCTAGCTATGGTTGGATATGGGATTTATTTGTTCG TCGAGTATAAGCATTCGACAGATGATGTGACATTTCCCCCTTCGAGTAGTCCGGACAGTTTGATACAGCTGGGTCGGCCTATGCTTATAGCTGTTTCGCT TTCTGAGAGCATCCTTGATAAGTTGCCAAAGGCTTGGTTCATATACTTGTTTATTGGTGTTGGAGCGATCCTCTTCGTTGTCTCTTGTTGTGGTTGTATT GGAGCTGTGACTAGGAACGGTTGCTGCCTAAGTTGTTACTCAGTCCTGCTTTTCTTACTGATATTGGTGGAGCTGGGATGTGCAGCGTTCAAATTTTTTG ACAAAAGTTGGCAAGAACAACTTCCAGTTGACAAGACCGGGAATTTCGACATGGTATATGGCTTTCTGAAAGAGAACTGGGAAATTGTCAAGTGGGTTGC TCTTGGAGTTGTTGTGTTTGAAGCTTTGATATTTGTGTTGGCCTTGGTGGTCAGAGCAGTAAACCGACCAGTAGAGTACAATAGTGATGATGAACTCATA GCCCCAAGGCAGCAGATCCGACAGCCATTGATGAATAGGCCACCGTTGCCACCTGCAACAGGTGTCCCCGTTGCTGGAACCCTTGACCAGCGCCCTAGCA GAAACGATGCATGGAGTACTCGTATGAGGGAAAAGGCATGA
AA sequence Show only first row Show all	>Lus10003011 pacid=23176149 polypeptide=Lus10003011 locus=Lus10003011.g ID=Lus10003011.BGIv1.0 annot-version=v1.0 MACRGFWECLLKLLNFLLAVAGLAMVGYGIYLFVEYKHSTDDVTFPPSSSPDSLIQLGRPMLIAVSLSESILDKLPKAWFIYLFIGVGAILFVVSCCGCI GAVTRNGCCLSCYSVLLFLLILVELGCAAFKFFDKSWQEQLPVDKTGNFDMVYGFLKENWEIVKWVALGVVVFEALIFVLALVVRAVNRPVEYNSDDELI APRQQIRQPLMNRPPLPPATGVPVAGTLDQRPSRNDAWSTRMREKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	0	1
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	1.0	0.9487
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	2.8	0.8790
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10032757 [exp]	4.9	0.8664
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	5.2	0.8426
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10041819 [exp]	6.0	0.8614
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	6.0	0.8339
AT4G25670			unknown protein		Lus10038842 [exp]	6.3	0.8418
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	7.3	0.8499
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	10.5	0.8379
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	15.6	0.8121

Compare expression of checked genes

Lus10003011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.