Plant FIBer expression Database

Lus10003012 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22680 66 / 7e-15 RDM1 RNA-DIRECTED DNA METHYLATION 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011043
[exp]
208 / 1e-70 AT3G22680 80 / 3e-19 RNA-DIRECTED DNA METHYLATION 1 (.1)
Lus10039354
[exp]
77 / 1e-18 AT3G22680 155 / 2e-48 RNA-DIRECTED DNA METHYLATION 1 (.1)
Lus10006598
[exp]
73 / 3e-17 AT3G22680 154 / 3e-48 RNA-DIRECTED DNA METHYLATION 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G076500
[exp]
86 / 3e-22 AT3G22680 137 / 2e-41 RNA-DIRECTED DNA METHYLATION 1 (.1)
Potri.008G155800
[exp]
77 / 1e-18 AT3G22680 187 / 3e-61 RNA-DIRECTED DNA METHYLATION 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09187 RdDM_RDM1 RNA-directed DNA methylation 1
Representative CDS sequence
>Lus10003012 pacid=23176143 polypeptide=Lus10003012 locus=Lus10003012.g ID=Lus10003012.BGIv1.0 annot-version=v1.0
ATGAAGCAACTTGAAATCCCATACAAGATCGAAAAATCAAATGAGCCAATTCTATACATGAATTGGGAAGGAGTGGGAAGAAGGATGAAGCAAAAGTACA
AGCAACCATTGCACTATTTGACCCAGAGGCTCCTAACACAGTGGGACAAATGGGAATCGGTCGACAAAATGGAGTCGTTCGAGGGGATGATGGAGCCATA
CGACGCTGAATCGGTCATTTTGGGGCTCGAACAAGTCCATAGGAAGTTCACTTGCCCTGAGCATCTAGCCAAGATGTGGCTTCGTGACCCTTTGTACCTT
GACTTGGTTGGCAATGAAGGGTAG
AA sequence
>Lus10003012 pacid=23176143 polypeptide=Lus10003012 locus=Lus10003012.g ID=Lus10003012.BGIv1.0 annot-version=v1.0
MKQLEIPYKIEKSNEPILYMNWEGVGRRMKQKYKQPLHYLTQRLLTQWDKWESVDKMESFEGMMEPYDAESVILGLEQVHRKFTCPEHLAKMWLRDPLYL
DLVGNEG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22680 RDM1 RNA-DIRECTED DNA METHYLATION 1... Lus10003012
[exp]
0 1
AT1G74670 GASA6 GA-stimulated Arabidopsis 6, G... Lus10024216
[exp]
4.7 0.9685
AT5G50220 F-box family protein (.1) Lus10015170
[exp]
5.2 0.9318
AT1G67520 lectin protein kinase family p... Lus10035879
[exp]
6.0 0.9060
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Lus10007355
[exp]
6.1 0.9048
AT3G20800 Cell differentiation, Rcd1-lik... Lus10031542
[exp]
6.6 0.9685
AT3G47570 Leucine-rich repeat protein ki... Lus10030851
[exp]
8.0 0.9205
Lus10021782
[exp]
8.1 0.9685
AT2G25470 AtRLP21 receptor like protein 21 (.1) Lus10027855
[exp]
9.4 0.9685
AT5G66870 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAI... Lus10038261
[exp]
9.6 0.8906
AT3G19540 Protein of unknown function (D... Lus10028040
[exp]
10.5 0.9685

Lus10003012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.