Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46560 330 / 2e-109 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011046 [exp] 723 / 0 AT5G46560 345 / 1e-116 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146500 [exp] 372 / 3e-126 AT5G46560 350 / 1e-118 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09402 [flax] [poplar] MSC Man1-Src1p-C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003015 pacid=23176154 polypeptide=Lus10003015 locus=Lus10003015.g ID=Lus10003015.BGIv1.0 annot-version=v1.0 ATGTCTTCCATACCGAAAAAGCGGCCAAAGCATGGCTCCAAATCCGAAATGCTATCTCCTTCTTCTTCGCTTCCGATCATGGAACCACCGGGGTTCCTCT TCCCGTCAAGGCAGGAGCTCACGACGCTCCTCGCCGTCGTCGCAATTGCGTCTTCCGTGTCTCCCCCCTGCCATATTATCGCCAATCATTTGACTCACGC CTCCTCGAAGCCCTTCTGCGATGGCAGTATTGACACCTCAGCTGATCCAGATGTATGTGACCCGTGTCCTATAAATGGAGGATGTTACGATGGGGATTTG GTTTGTGATAATGGCTACAGAAGGAAACGGAATGTGTGTGTGGAAGATGGAGATAGTAACGAAAGAGCTAAGAAACTTTTTGAGCTACTTGAAAGCTATC TCTGTCAGTCGTATGCGCAGTTTTCATGCTATGGAACTGGGAGAGTATGGGTGCAAGAGAATGAGATGTGGGAAGATGTACATGACCGAGTGATGCGAAT TTTCGGCCAGGATAATGCAAGTTACGCCTATGCCAAGAACAAAGCAATGGAGCTGATTGGCGGATTGATGGAGAGGAAGACAAACCCAGAGGGGATTTCA GAGTTGAAGTGTCCTAGTACCTTAGCCGAAAAATACAAACCAGTGGATTGTCGTTTTCGTGAATGGATATTCCACCATGCTTTTGTTCTTGTGGCAGCCT GTACTATGGTTGTTGGATCGACATGTTTACTCTGGAAAATCCGCCAGAGATTCTACGCCACAAAGAGGAGCGAAGAGTTGTATCATCAGGAGAATGCCAT CGAATCAAAAGGCGAAAGTGGTGAATTTGAACCATGGGTGGTAGCTTCTCAGTTACGGGATCATCTGTTATTGCCCAAAGAAAGGAGAGACCCTTTGCTA TGGAAAAAGGTTGAGGAGTTGGTACAGGACGATTCACGAATAGACCGATACCCTAAGCTTGTCAAGGGTGAATCGAAGGTGGTGTGGGAATGGCAAGTGG AAGGGTGTCTGAGCTCTGCAGGCAAGAAAAGCAAAGAGAGAGTAAACCAACAAAGGTCCAATCCCGGTACCGAGGTTTACCCTAATCACGAAACCCACAA GTTGCAATCCGGTAAGGCTCTCAAACAACTTGTTTGCCTACCAGTCGAAGTTTTAAGCACCCACCAAGCTTTTGTTTCCCTCCACAGGTCGAAAGCTACC ATTGTTTTTATCACTGATCACCTCTGGAAAAGTGGTTTATGTACCTTAACATGCATCCGAGGCACGTTCCATTCGCAATCTGAACACAATCAGATCGTAA ACCGAATCTCCTGGAAGGCTCTTATGCCCTTTAACTATAGGAATCAGTCTTACACACTGTATATGCGGTGTGTTTTTATCTTGAAGATATTAGCTGTGTG GTTGTATCAAGAATCACCCCGTTTTTCTCGTAGATATCTCGATTCTCAATCAACCTGA
AA sequence Show only first row Show all	>Lus10003015 pacid=23176154 polypeptide=Lus10003015 locus=Lus10003015.g ID=Lus10003015.BGIv1.0 annot-version=v1.0 MSSIPKKRPKHGSKSEMLSPSSSLPIMEPPGFLFPSRQELTTLLAVVAIASSVSPPCHIIANHLTHASSKPFCDGSIDTSADPDVCDPCPINGGCYDGDL VCDNGYRRKRNVCVEDGDSNERAKKLFELLESYLCQSYAQFSCYGTGRVWVQENEMWEDVHDRVMRIFGQDNASYAYAKNKAMELIGGLMERKTNPEGIS ELKCPSTLAEKYKPVDCRFREWIFHHAFVLVAACTMVVGSTCLLWKIRQRFYATKRSEELYHQENAIESKGESGEFEPWVVASQLRDHLLLPKERRDPLL WKKVEELVQDDSRIDRYPKLVKGESKVVWEWQVEGCLSSAGKKSKERVNQQRSNPGTEVYPNHETHKLQSGKALKQLVCLPVEVLSTHQAFVSLHRSKAT IVFITDHLWKSGLCTLTCIRGTFHSQSEHNQIVNRISWKALMPFNYRNQSYTLYMRCVFILKILAVWLYQESPRFSRRYLDSQST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46560			unknown protein		Lus10003015 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	8.4	0.7665
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	15.8	0.7543
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	18.7	0.7657
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	25.6	0.7619
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10028602 [exp]	30.2	0.7429
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	33.1	0.7451
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	40.1	0.6556
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10037308 [exp]	43.1	0.7361
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	44.0	0.7266
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	48.5	0.7189

Compare expression of checked genes

Lus10003015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.