Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) AT1G78750 44 / 0.0001 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011048 [exp] 452 / 1e-158 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 227 / 2e-69 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 189 / 7e-56 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10011047 [exp] 150 / 5e-45 ND 36 / 0.002 Lus10034418 [exp] 117 / 2e-28 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10004853 [exp] 109 / 1e-26 ND / Lus10013071 [exp] 110 / 4e-26 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10026712 [exp] 96 / 2e-22 AT3G44590 97 / 2e-25 60S acidic ribosomal protein family (.1.2) Lus10020638 [exp] 92 / 3e-22 AT1G13570 37 / 0.002 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 75 / 2e-14 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 74 / 3e-14 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 72 / 2e-13 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 72 / 2e-13 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.011G136200 [exp] 50 / 1e-06 AT1G56400 215 / 2e-64 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003016 pacid=23176153 polypeptide=Lus10003016 locus=Lus10003016.g ID=Lus10003016.BGIv1.0 annot-version=v1.0 ATGAATCTCCCAACTCTCGCATTCGATGAAACCTTTGAAACAACGACAATGCTCGATCTCTTTAGAGTTCTCATGCTTCACCGTGGACCTTTGAAGGGGT TCCATCTCCCCAGTCCGGTATCGGAAGAACACATTGACAAAATCATGAGTTTCCTTGGAGACAAACCGGTCGAGAGCCTAACCATCACGACACAAGGATA CGAATTCTATTCATTGTCGTCGTTTTCGCGACATATGAAGTCGTTACGCTTCTCTGGCTGTCGTTACCCAACATCGTCCTCCGGTGGTGTTTCGTTCGAG GAATTTCGTGTTCTGACTGTTCTGGAGCTTAGGAATTTGAAGCTGATGGACGAAGACGACTCTTCGTGGAGCTTTCGATGTCCATTTCTTTCAGTTTTGA CCCTGGACGGATTCGGAAGACTTTATCAGCGTCCTTCCATTTTGATAGAAGCCCCGAGGCTCGAGTATTGCAGCTTTGTTGGGAACTTTTGCTGTCTCAC TTTGAAGAATACGCAATGCCTTAAAAAGGCTATCCTTCATAAAGAACCTACTCACCTGGTGGACAAGAAAGCCGACTCGATACTCAAACCATGGGATGGC CTTGCTGCCGTTGAATCGCTTTCTGTGTCCGGCCATTTCTGTAGGTACCTTGCACCGCCAAGAAACGGAAGGGCTATGTTAAGGTTGCTGAAGCCGTGGG AGATGCTCAGGCACTTGACCTTCCATGACATTTGTTTGAGTAGATATGACCATTCATGGTCTCTTCTTCAAATTTTGAGGAGTTCACCTAATCTACAACG ACTTATAATCCAGATAACAAGGGCTGTGGATCCCTCACTGAGATCACGCTTGGTTGGTTCTGCTATAGATGTTAGAACACTCCAAAGATGGATAGAAGGT AAAGGTATTTCTCTGTATGTGCTTAGACGACTCAAGAGCGTGGAAGTGAAGAATCTGAAAGGTATAAGACATGAAATCACTTGGATTCGATGGTTATTGA AGTCCTCACCAGCACTCGACGAGATGGAGATCACACTCTCTGCAACATTATCAGCTGTTGAAAACATATCGATTCTGAAAGAGCTGAATGGAATTCGGAG ACCGTCTGCCATAGCACGAATGATAATTAATTGA
AA sequence Show only first row Show all	>Lus10003016 pacid=23176153 polypeptide=Lus10003016 locus=Lus10003016.g ID=Lus10003016.BGIv1.0 annot-version=v1.0 MNLPTLAFDETFETTTMLDLFRVLMLHRGPLKGFHLPSPVSEEHIDKIMSFLGDKPVESLTITTQGYEFYSLSSFSRHMKSLRFSGCRYPTSSSGGVSFE EFRVLTVLELRNLKLMDEDDSSWSFRCPFLSVLTLDGFGRLYQRPSILIEAPRLEYCSFVGNFCCLTLKNTQCLKKAILHKEPTHLVDKKADSILKPWDG LAAVESLSVSGHFCRYLAPPRNGRAMLRLLKPWEMLRHLTFHDICLSRYDHSWSLLQILRSSPNLQRLIIQITRAVDPSLRSRLVGSAIDVRTLQRWIEG KGISLYVLRRLKSVEVKNLKGIRHEITWIRWLLKSSPALDEMEITLSATLSAVENISILKELNGIRRPSAIARMIIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10003016 [exp]	0	1
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	2.2	0.8097
AT3G47090			Leucine-rich repeat protein ki...		Lus10034078 [exp]	6.6	0.8015
AT5G36250			Protein phosphatase 2C family ...		Lus10012218 [exp]	19.6	0.7340
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	25.7	0.7768
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10035029 [exp]	26.2	0.7883
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	27.7	0.7903
AT5G14990			unknown protein		Lus10036529 [exp]	34.5	0.7765
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	34.6	0.7872
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	34.9	0.7523
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	38.7	0.7848

Compare expression of checked genes

Lus10003016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.