Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 253 / 5e-74 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 250 / 3e-73 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G47150 163 / 4e-45 YDG/SRA domain-containing protein (.1) AT5G47160 163 / 3e-44 YDG/SRA domain-containing protein (.1) AT2G33290 159 / 3e-41 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G04940 154 / 1e-39 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 153 / 3e-39 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 141 / 3e-35 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT5G13960 137 / 5e-34 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT1G17770 127 / 2e-30 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011049 [exp] 1066 / 0 AT2G22740 255 / 4e-75 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) Lus10001011 [exp] 283 / 9e-84 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 271 / 8e-81 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 273 / 4e-80 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10029470 [exp] 159 / 3e-41 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10032528 [exp] 152 / 3e-40 AT2G35160 218 / 2e-63 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10026137 [exp] 153 / 3e-39 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 153 / 4e-39 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10043211 [exp] 145 / 7e-38 AT2G35160 192 / 3e-54 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083100 [exp] 247 / 5e-71 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G188700 [exp] 162 / 2e-42 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 159 / 3e-41 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.010G064300 [exp] 157 / 1e-40 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.012G115500 [exp] 153 / 5e-40 AT2G35160 172 / 3e-46 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.008G173100 [exp] 155 / 9e-40 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.006G027600 [exp] 154 / 1e-39 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 147 / 3e-37 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.015G111884 [exp] 140 / 3e-36 AT2G35160 167 / 3e-45 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.002G237950 [exp] 135 / 3e-33 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10003017 pacid=23176150 polypeptide=Lus10003017 locus=Lus10003017.g ID=Lus10003017.BGIv1.0 annot-version=v1.0 ATGCAAGGAAAATCGACGAATGTAGTGTCGTCGAGGGTGCCATCCGACGGGTTTGTAGTGGAGATGGAGAAGCCAAAGTATAAGAGGAGGAGAGTTTTGG GTGTAAGGACTTTCCCTCCTGGCTGTGGTCCAAATGCTTCTCCAATACCAGCGAATTCGGTGACTGAATCTCACGGTCTAGCTGTTTCTGGTGGTGAGAA TGGCGACCCGGTTGCATTGGAGAACGGATCTGATGGTTTGAAGCAGGATATGGATTCAGTAGCTTTGGGGAAGGATGTTCTTGAGAAAACTGATCATGAC GAGTTCAAGGTCGATTCGATGCCGGATAGTGAAGGAGTTCCAAATGATACTATGATGGAGAATGGAAGCAATACCTGTGATGACGATCCGCTTGAGCAAA TGGATCATGGTAAGCCTAATGCTGATGATGAACTGCCATTTGAGGAACTCAAATCAGAGAACAATCCGGGGGTTGATTCACCAGCAGAAAGTTCATCGAC AAATGATGCAGAAGAGCTTACGGATCCAGATAAAGAAGCTGTCGTTCAGAAGTATCCTCCTAGGAGAAAAATCCCAGGTGTTCGAGACTTCCCTCCGAGT TGCGGAAGAAATGCTAAACCTCCTAGCAAGGTTGATGTCCAGGATGACGCTGAAACTGCGAGAGATATTGATACAGATGCTGGAGCTCAGCAGGGAAAGG TCCTCATGCGTAAGTCTTCTTTGGTGAACCGTAAAGTGGCAAGAAAGTCTGTAATAATGCCACGAGATTATAAGAAATCATTCTCTTTGAGGAAGAACAA GATTGATGAGAAGAATCACGATGATCCTCATTTCGTTCAGAAGCCAACTGATGAAAATGGTGGCTCAACTTCTTCTGATGCTGAGAGAAGCAAGGTTGAA GGCCAGGAAGACGCAGAAACGTTTAAAGATATCGATACAGATGGTGGAGCTCAGTCTGAAAGCGAAGTTCTCAAGGGAAAGGTCCTCGTGCGCAAGTCTT CTTTGGGGAAGCGAGTGGCGAAAAAATCTGTTATAATGCCACTGGATAGTAAGAAATCATTCTACCTGGGGAAGAAGTTGTCACAAAGAGCTGTAGATGA GAATCGGGATGATTCTCAATTCGTTCGGAGTCCGGCTGATAAAAATTGTGGCTCGACTTCTTCTGATGCTCAGAGAACCAAGGTGCAGGAGGTACTGCAT TTGTTCCACTCCCTATGCAAGGTATTCGAGGAGGAAGCGAAGACCAACCCGGGAAAGCGAGTCGATTTCCTGGCCGCTGCTGAGCTCAAGAGTCGAGGAA AGCACCTCAACGCCGGCCAGCATATCATCGGATCGGTACCGGGGGTTGAAGTTGGCGACGAGTTTCAGTACAGGCTGGAGCTCCACATCATCGGCCTTCA TCGTCCGACTCAAGGCGGCATCGACTTCACGAAGCAGCCTCGAGGGATCGTAGCAACGAGCGTTGTGGCATCGGGTGGATATGACGACAATCTGGACTAC TCGGATGTGCTCGAGTACACTGGCCAAGGAGGGGTCTCGACGAAGGGCAAGCAGGCCGAGGATCAGAAGCTCGAAAGAGGGAATCTTTCGTTGGCGAATA GTGTTAGTGTGAAGAATCCGGTGAGAGTGGTTCGTGGAAGGAATCGGATGACGGATGATGGGAAAGTTGGTAAACTTTATGTGTATGATGGTTTGTATAC CGTGGAGGAGTATTGGCAAGAGACAGGGCCACAGGGGAATCTGGTTTTCAAGTTCCGGCTGGTTCGGATGTCTGGTCAACCGGAGGTTGCTTGGAAACAG TCAAAGAACTCGAAAAAGACTCCAACCAGTCGTAGCTTTTTACATGATTGA
AA sequence Show only first row Show all	>Lus10003017 pacid=23176150 polypeptide=Lus10003017 locus=Lus10003017.g ID=Lus10003017.BGIv1.0 annot-version=v1.0 MQGKSTNVVSSRVPSDGFVVEMEKPKYKRRRVLGVRTFPPGCGPNASPIPANSVTESHGLAVSGGENGDPVALENGSDGLKQDMDSVALGKDVLEKTDHD EFKVDSMPDSEGVPNDTMMENGSNTCDDDPLEQMDHGKPNADDELPFEELKSENNPGVDSPAESSSTNDAEELTDPDKEAVVQKYPPRRKIPGVRDFPPS CGRNAKPPSKVDVQDDAETARDIDTDAGAQQGKVLMRKSSLVNRKVARKSVIMPRDYKKSFSLRKNKIDEKNHDDPHFVQKPTDENGGSTSSDAERSKVE GQEDAETFKDIDTDGGAQSESEVLKGKVLVRKSSLGKRVAKKSVIMPLDSKKSFYLGKKLSQRAVDENRDDSQFVRSPADKNCGSTSSDAQRTKVQEVLH LFHSLCKVFEEEAKTNPGKRVDFLAAAELKSRGKHLNAGQHIIGSVPGVEVGDEFQYRLELHIIGLHRPTQGGIDFTKQPRGIVATSVVASGGYDDNLDY SDVLEYTGQGGVSTKGKQAEDQKLERGNLSLANSVSVKNPVRVVRGRNRMTDDGKVGKLYVYDGLYTVEEYWQETGPQGNLVFKFRLVRMSGQPEVAWKQ SKNSKKTPTSRSFLHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	0	1
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	1.0	0.9156
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	2.8	0.8780
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	4.9	0.8513
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	5.7	0.8374
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	8.0	0.8132
AT5G60050			BTB/POZ domain-containing prot...		Lus10023336 [exp]	10.9	0.7876
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	12.5	0.8234
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	12.6	0.8266
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	13.4	0.8114
AT4G02720			unknown protein		Lus10022052 [exp]	16.1	0.8206

Compare expression of checked genes

Lus10003017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.