Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38740 350 / 1e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 79 / 3e-16 haloacid dehalogenase-like hydrolase family protein (.1) AT4G21470 57 / 3e-09 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT4G39970 56 / 8e-09 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 45 / 3e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 43 / 0.0001 GPP1 glycerol-3-phosphatase 1 (.1) AT3G10970 42 / 0.0003 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040116 [exp] 387 / 6e-137 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030930 [exp] 246 / 1e-82 AT2G38740 222 / 5e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030929 [exp] 177 / 3e-56 AT2G38740 165 / 1e-52 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020699 [exp] 82 / 4e-17 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10018906 [exp] 81 / 5e-17 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10029840 [exp] 80 / 2e-16 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10028605 [exp] 78 / 5e-16 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 59 / 2e-09 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10006954 [exp] 55 / 2e-08 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147300 [exp] 363 / 2e-127 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 353 / 1e-123 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 339 / 6e-118 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 296 / 3e-100 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G135000 [exp] 172 / 6e-53 AT2G38740 176 / 4e-55 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 74 / 1e-14 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G077200 [exp] 70 / 2e-13 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 64 / 2e-11 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.007G095200 [exp] 61 / 3e-10 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.018G092500 [exp] 48 / 2e-06 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10003018 pacid=23176157 polypeptide=Lus10003018 locus=Lus10003018.g ID=Lus10003018.BGIv1.0 annot-version=v1.0 ATGTGGCCAACTCGCATCTGTACTCCTCCATTGGTTCATCGATTCTGCGTTAAATCTCCACCATTTCTTCCATTCCCCAATCAAATCTCTCTGCAAGTAA AATCCTCCATTTCTCATCGGAACATGGCTGCCGCAACAGCTGAAAGCTCCGCCGCCGATACTAGTTCTCTGGCCAGAATCGCGCCAATCGAAGCAGTGCT TTTCGACGTCGACGGGACCTTATGCGACACCGATCCGATCCATCACCGTGCCTTCATTGAACTGCTTCAAGAGATGAACTACAACAATGGAGTTCCAATA TCAGAAGACTTCTACATCAATAACATCGCCGGGAAGCACAACAAGGAGATCGCGGAGCTCTTCTTCCCTGATGATATCCCGCGAGGGATGAAGTTCACAG AAGACAAAGAAGCACTGTTCCGAAAGTTGGCTGCTGAGCACATCACGGCGCTAGACGGGCTGTACAAGGTGACGAAGTGGGTCGAGGATCAAGGCTTGAA GCGCGCTGCAGTCACCAACGCTCCAAAGCCGAACGCTGAGCTGGCAATCTCGAAGCTCGGGCTGTGCAATTTCTTCCAGGCTGTCGTCCTCGGGGACGAA TGCGAGCATGCCAAGCCACACCCTGAGCCTTACCAGAAGGCGCTCGAGATGTTGCAGGTGTCGAAGGAGCACACTTTCGTATTCGAGGATTCCGTGTCCG GGATCAGAGCAGGAGTTGCAGCTGGGATGCCGGTTATCGGACTGACTACCGGGAATCCAGAGCATTTGCTAATGCAGGCGAATCCGACGTTCCTGATCAA GAACTACGACGATCCAAAGCTGTGGAAGGCTCTCGAGGAAGTTGATCGAGTCATGGGAGCATCTAGGAAACAATGA
AA sequence Show only first row Show all	>Lus10003018 pacid=23176157 polypeptide=Lus10003018 locus=Lus10003018.g ID=Lus10003018.BGIv1.0 annot-version=v1.0 MWPTRICTPPLVHRFCVKSPPFLPFPNQISLQVKSSISHRNMAAATAESSAADTSSLARIAPIEAVLFDVDGTLCDTDPIHHRAFIELLQEMNYNNGVPI SEDFYINNIAGKHNKEIAELFFPDDIPRGMKFTEDKEALFRKLAAEHITALDGLYKVTKWVEDQGLKRAAVTNAPKPNAELAISKLGLCNFFQAVVLGDE CEHAKPHPEPYQKALEMLQVSKEHTFVFEDSVSGIRAGVAAGMPVIGLTTGNPEHLLMQANPTFLIKNYDDPKLWKALEEVDRVMGASRKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10003018 [exp]	0	1
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	7.5	0.8909
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	8.2	0.8944
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10027469 [exp]	12.2	0.8606
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	16.5	0.8795
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10033144 [exp]	16.6	0.8775
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	22.4	0.8731
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	28.9	0.8138
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	31.2	0.8716
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	32.8	0.8782
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	40.0	0.8725

Compare expression of checked genes

Lus10003018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.