Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46920 570 / 0 Intron maturase, type II family protein (.1) AT1G30010 330 / 6e-106 Intron maturase, type II family protein (.1) ATMG00520 44 / 0.0003 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011050 [exp] 772 / 0 AT5G46920 1110 / 0.0 Intron maturase, type II family protein (.1) Lus10042828 [exp] 330 / 4e-109 AT1G30010 617 / 0.0 Intron maturase, type II family protein (.1) Lus10028124 [exp] 333 / 3e-107 AT1G30010 1011 / 0.0 Intron maturase, type II family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086801 [exp] 644 / 0 AT5G46920 1150 / 0.0 Intron maturase, type II family protein (.1) Potri.001G147801 [exp] 638 / 0 AT5G46920 1140 / 0.0 Intron maturase, type II family protein (.1) Potri.004G132450 [exp] 338 / 3e-109 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase)
Representative CDS sequence Show only first row Show all	>Lus10003020 pacid=23176147 polypeptide=Lus10003020 locus=Lus10003020.g ID=Lus10003020.BGIv1.0 annot-version=v1.0 ATGCATCGTCGTCTGGCCACACTTGTATACAGGCATAGAATTCCAATAACTACACCTCTCTCCCCAGCTACAATCTCTGGTCAATTGAATAACCGGAGCT ATGTTTTCGCTATATTTCGGTTATCTTCCTTTACTCCATCGTACAAACGGTCACCAGACCCCGACGATCCCACCAACTTGATGAGGGAAGACGGAGTCTC GGTATGTTCGCAAATGTGGATCGAGAACTTCAGAGAACCGGACAGGACGGTCACGAACTTGACCACTTATCTACGCCGGTTCGAGCTGTGGGTGTTGGGG TATCAGAAAGTCTGCGCTGACGAGATTGGAACCTACGTGCCTCGTAGCGCTATTCAAAGGTCCGCATTGGAGGATTTGCTTGTGCTTAGAAATGCTGTTC TTGATGGCAGGTTCAAGTGGGGTGCTAGGCTTGATTTCTTCATCAAGTCACCGAAGGACAAGACCGATTATGCTTCATTGTCCAAGAGAAAGATCAAGGC GATTTTAACAACAACTCAGCCTGCTGCATTCCAGGACAAGATAGTTCAGGAAGTATTGTTTATGATACTCGAGCCGGTTTATGAGGCCAGGTTTTCGGAC AAGTCGTTCGCGTTCAGGCCTGGTAGGACAGCACATACCGTGCTGAGGGTGATTCGGAGGAGTTTCGCCGGGTATTTATGGTACTTGAAAGGTGACTTGA GCACGGTTCTGGACGGTAGTATGAAGGAGAGCTTTGTGATTGGTGCTTTGATGAGGGACGTTCGAGATAAGAACATCGTTGATCTTGTTAAGTCCGCATT GTCGACACCGGTTATCACAACTGGATTCGAGTTACCGAAGAAGAAGACGAAGAGGAAGCACCAGAAGAAGAGAGTGCTGGCAGAGGATGAACCGAAACCG GATCCATATTGGCTCGATACATTCTTCGGATTTGCACCGGAGGAAGCTGAGAAGCAACCTAAATGGGGCCATTGCGGGATTCTTAGCCCGCTTTTAGCGA ACATATGTCTGGATGAATTAGATAGATGGATGGAGAATAAGATCAAGGAGTATTATACTCCGTCGAAAAGCGACGTTATATGGAACAGCCCCGAAGGAGA ATCGGAGCAAGGAAACACATCTTGGCCGGAGTTTGTACCGACTAGCGGCCCTGATAAAACCAGAAAGATGGATGTATCCGACGCTTCGATATACTGCCAC AGGTGGGAAGATCATCAGCGAAAAGGGCGTGGGGACGCTCTTATCGGTCACCGCGAGTTTGAAACAGTGCATCAAGCAGTTTCGGAAGCTGGATTTTTTG AAAGGCGATCGAGATCCGGATCCGCAGCCTTGTTTTCGAATGTTCCACGCTACTCAAGCTCATACGAATGCACAGATGAACAAGTTTCTTTCGACGATGG TCGAGTGGTTTAG
AA sequence Show only first row Show all	>Lus10003020 pacid=23176147 polypeptide=Lus10003020 locus=Lus10003020.g ID=Lus10003020.BGIv1.0 annot-version=v1.0 MHRRLATLVYRHRIPITTPLSPATISGQLNNRSYVFAIFRLSSFTPSYKRSPDPDDPTNLMREDGVSVCSQMWIENFREPDRTVTNLTTYLRRFELWVLG YQKVCADEIGTYVPRSAIQRSALEDLLVLRNAVLDGRFKWGARLDFFIKSPKDKTDYASLSKRKIKAILTTTQPAAFQDKIVQEVLFMILEPVYEARFSD KSFAFRPGRTAHTVLRVIRRSFAGYLWYLKGDLSTVLDGSMKESFVIGALMRDVRDKNIVDLVKSALSTPVITTGFELPKKKTKRKHQKKRVLAEDEPKP DPYWLDTFFGFAPEEAEKQPKWGHCGILSPLLANICLDELDRWMENKIKEYYTPSKSDVIWNSPEGESEQGNTSWPEFVPTSGPDKTRKMDVSDASIYCH RWEDHQRKGRGDALIGHREFETVHQAVSEAGFFERRSRSGSAALFSNVPRYSSSYECTDEQVSFDDGRVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10007652 [exp]	1.0	0.9340
AT1G36990			unknown protein		Lus10029655 [exp]	3.2	0.9326
AT4G32420			Cyclophilin-like peptidyl-prol...		Lus10008079 [exp]	4.6	0.8930
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	6.5	0.9046
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	8.1	0.9076
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	8.1	0.9234
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	9.2	0.9187
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	9.5	0.9092
AT3G53940			Mitochondrial substrate carrie...		Lus10022597 [exp]	11.4	0.9049
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	14.0	0.9119

Compare expression of checked genes

Lus10003020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.