Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26430 385 / 5e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 366 / 1e-125 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT5G14450 281 / 5e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 239 / 4e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 238 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT4G01130 220 / 1e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 216 / 3e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 216 / 7e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 212 / 2e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 192 / 6e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011051 [exp] 565 / 0 AT3G26430 340 / 1e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000185 [exp] 404 / 1e-142 AT3G26430 266 / 2e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 292 / 2e-96 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 289 / 3e-95 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036873 [exp] 273 / 6e-90 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 270 / 1e-83 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 244 / 6e-78 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 236 / 8e-75 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029638 [exp] 227 / 9e-71 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047900 [exp] 424 / 5e-148 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 399 / 2e-138 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 327 / 3e-110 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 326 / 1e-109 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 322 / 4e-108 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 308 / 1e-102 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 283 / 7e-93 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 243 / 2e-77 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 236 / 2e-74 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.014G094100 [exp] 217 / 3e-67 AT4G01130 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003021 pacid=23176139 polypeptide=Lus10003021 locus=Lus10003021.g ID=Lus10003021.BGIv1.0 annot-version=v1.0 ATGAATGTTATGGGAAGCGTTTTACTACCTGAAGAAACGCCAGCTAGAAGGATTAAGCGACCGGAGTGCGGAAACAGGAGGCGGAGAACTGTGGTCGACG GTCGAAGGTCGCCGGAGCGGCGGTGGCGGACTTGGATGGCTTCGGAGTGGGAGGTTTTAGGTTCTTCCTTTCTGCTAGAAGCTTACGAGCTGGAACTAAG GGCGACGGAGAGTTTGGGTTTGCCCTATTTAAGTGCATTCCTCGACTCAGTGGGCAGCAACTTCAGCCATGGAGCCAACTTCGCCACGGCCGGTTCTACG GTTCGACCGCCGAACCAAACCCTTTACCAGAGCGGGTTCAGCCCTATCTCCCTTAACGTCCAGTCTTACCAGTTCCATGACTTCGTCAACCGCTCCCAAA TCGTCCGAGACAGAGGAGGAGTCTACTCGAAACTATTACCGAAACCGGAGCACTTCGCCCGAGCGCTCTACACATTCGACATCGGTCAAAACGACCTAAC CTCGGCCTACTTCCTCAACATGACGACCCCGCAAGTCATGGCGCAAATTCCGGACGTGCTCTCCCAATTTAAGGAGGCGGTCAAGTCTGTTTACTCTCAG GGCGGCAGCTACTTCTGGATCCACGGGACCGGCCCGATAGGGTGTTTGGCCTATGTCTTGGACCGTGTCCCAACGAACGAGTTCGATGAGGCCGGGTGTG GGGTGCCGATGAACCGGGTGGCTCAGCGGTTCAACCGTGGGGTAAAGACGATGGTTAGAGAATTGGAAGTTGAGTTGCCGTTCGCTGCTATTACTTACGT GGACGTTTACTCTGCGAAGTACGAGCTCATTCGCCATGCAAAATTACACGGGTTCAAGGAGGGGATAACGGCGTGCTGTGGCTACGGCGGGAAGTACAAC TACAGCAAAGAGATCGGGTGCGGTGGGAAGATGACGAAGAAGAACGGAGTAACGGTGGAGGCCAAATCGTGTAAAGATCCGTCCGTTTACGTTAACTGGG ACGGCGTTCACTTCACGGAAGCCGGGAACAGGTGGATCTTCGAGCAGATCGTGGACGGAAAGTTGTCCGACCCTCCTCTTCCGGTGAGCATGGCTTGCCA TAGAAAAGAGTAG
AA sequence Show only first row Show all	>Lus10003021 pacid=23176139 polypeptide=Lus10003021 locus=Lus10003021.g ID=Lus10003021.BGIv1.0 annot-version=v1.0 MNVMGSVLLPEETPARRIKRPECGNRRRRTVVDGRRSPERRWRTWMASEWEVLGSSFLLEAYELELRATESLGLPYLSAFLDSVGSNFSHGANFATAGST VRPPNQTLYQSGFSPISLNVQSYQFHDFVNRSQIVRDRGGVYSKLLPKPEHFARALYTFDIGQNDLTSAYFLNMTTPQVMAQIPDVLSQFKEAVKSVYSQ GGSYFWIHGTGPIGCLAYVLDRVPTNEFDEAGCGVPMNRVAQRFNRGVKTMVRELEVELPFAAITYVDVYSAKYELIRHAKLHGFKEGITACCGYGGKYN YSKEIGCGGKMTKKNGVTVEAKSCKDPSVYVNWDGVHFTEAGNRWIFEQIVDGKLSDPPLPVSMACHRKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10003021 [exp]	0	1
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	2.6	0.8952
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	3.5	0.8624
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	11.0	0.8294
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	14.4	0.8652
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	20.9	0.8132
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	22.7	0.8592
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10042325 [exp]	28.2	0.8347
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	30.6	0.8190
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	33.7	0.8531
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	35.2	0.8439

Compare expression of checked genes

Lus10003021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.