Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13870 502 / 0 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT2G06850 484 / 2e-174 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G14130 308 / 4e-105 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 307 / 1e-104 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G65730 306 / 2e-104 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G03210 296 / 3e-100 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT4G37800 294 / 1e-99 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G57550 293 / 4e-99 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT1G11545 288 / 3e-97 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT5G57560 285 / 3e-96 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011052 [exp] 596 / 0 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 520 / 0 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 517 / 0 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039715 [exp] 324 / 3e-111 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10018503 [exp] 319 / 2e-109 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10031586 [exp] 310 / 7e-106 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10039643 [exp] 304 / 1e-103 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 303 / 5e-103 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10010938 [exp] 300 / 4e-102 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071000 [exp] 519 / 0 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 508 / 0 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 499 / 2e-180 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 314 / 2e-107 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.002G060500 [exp] 311 / 2e-106 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 311 / 3e-106 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.019G125000 [exp] 310 / 6e-106 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.005G201200 [exp] 308 / 5e-105 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 308 / 6e-105 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.013G152400 [exp] 308 / 6e-105 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10003022 pacid=23176152 polypeptide=Lus10003022 locus=Lus10003022.g ID=Lus10003022.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTGCAATTGCTCTGTTTCTCCTCATTTCCGTCTTCTTTGCCGGAGCAATGGCTGCTCCACCGAAGAAGGCGGTGAACGTCCCCTTCGGAA GGAACTACGCTCCCACGTGGGCTTTCGACCACATCAAGCAGTTCAATGGCGGTAACGAGATCCAGCTCCACCTCGATAACTACACAGGGACGGGGTTTCA GTCGAAGGGGTCGTACTTGTTCGGCCACTTTAGTATGCATATCAAGATGGTTGGTGGAGACTCTGCCGGGACCGTCACTGCTTTCTATCTATCGTCCCAA AACTCGGAGCACGACGAGATCGACTTCGAGTTCTTGGGGAACAGAACAGGACAACCTTACATCCTCCAAACGAATGTGTTCACCGGTGGCAAGGGCGATC GGGAGCAGAGGATCTACCTCTGGTTCGACCCGACGAAAGACTACCACTCGTACTCGGTCCTCTGGAACAGCTACCTTATTGCGTTCTTCGTTGATGACGT CCCGATCCGAGTATTCAGGAACCTGAAGAACCTAGGAGTGAAGTTCCCCTTCCAGCAGCCGATGAAGATCTACTCCAGCCTGTGGAACGCCGACGACTGG GCGACGAGGGGCGGCCTGGAGAAGACTGACTGGTCCAAGGCGCCATTCGTCGCCGCCTACAAGGGCTTCCACATCGACGGTTGCGAGGCGTCAGTGAATG CCAAGTTTTGCGCCACTCAGGGAAAGAGGTGGTGGGATCAGAAGGAGTTCCAGGACATGGATGCTCAGCAGTACCGCCGGATCCGGTGGGTCCGAAAGAA GTACACCATTTACAACTACTGCACCGACCGGGTCCGGTACCCTAAGATGCCCTCGGAGTGCAAGCCCGATCGTGACGTTATGGGTCGTGGGAGAGTTTGA
AA sequence Show only first row Show all	>Lus10003022 pacid=23176152 polypeptide=Lus10003022 locus=Lus10003022.g ID=Lus10003022.BGIv1.0 annot-version=v1.0 MAASAIALFLLISVFFAGAMAAPPKKAVNVPFGRNYAPTWAFDHIKQFNGGNEIQLHLDNYTGTGFQSKGSYLFGHFSMHIKMVGGDSAGTVTAFYLSSQ NSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKDYHSYSVLWNSYLIAFFVDDVPIRVFRNLKNLGVKFPFQQPMKIYSSLWNADDW ATRGGLEKTDWSKAPFVAAYKGFHIDGCEASVNAKFCATQGKRWWDQKEFQDMDAQQYRRIRWVRKKYTIYNYCTDRVRYPKMPSECKPDRDVMGRGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	0	1
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	1.4	0.9786
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	2.8	0.9567
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	4.0	0.9723
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	5.0	0.9557
AT4G32060			calcium-binding EF hand family...		Lus10041027 [exp]	5.5	0.9320
AT1G62770			Plant invertase/pectin methyle...		Lus10024593 [exp]	7.1	0.9315
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	7.7	0.9407
AT1G06930			unknown protein		Lus10024185 [exp]	8.1	0.9569
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	8.8	0.9420
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	11.2	0.9371

Compare expression of checked genes

Lus10003022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.