Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61000 47 / 4e-05 ATRPA70D Replication factor-A protein 1-related (.1) AT5G08020 46 / 6e-05 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017803 [exp] 341 / 9e-114 ND / Lus10006887 [exp] 265 / 7e-80 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10042979 [exp] 258 / 2e-77 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10036312 [exp] 218 / 4e-63 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10034056 [exp] 197 / 6e-57 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10027612 [exp] 194 / 3e-54 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025008 [exp] 182 / 4e-51 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10026445 [exp] 163 / 2e-44 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10030315 [exp] 150 / 1e-38 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061550 [exp] 64 / 1e-10 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165480 [exp] 59 / 3e-09 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 50 / 1e-06 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003025 pacid=23180842 polypeptide=Lus10003025 locus=Lus10003025.g ID=Lus10003025.BGIv1.0 annot-version=v1.0 ATGCTGTTGCACGAGATCGTTCCGACCGAACCTCCGGCCGAACTTCAGCTCCGCCTCGAACACATTTGGAAGCTCTGCAACCCGGCTGAACCAGCTAAAT TTTTCTCTTTAGGGACGCTTTGGATAGACTCAGAGGCGATACCCTGCGCTCCTTCGCCGCTGATGTGGAGAAACGCATATCTGTCGGGTCTATCTACACT ATTGCAGCTTATACCCTTAGATCTCCTCGGCCGACCTAAACGTGGTTGTCTGTTTCCTCATTGGCTCGACCTCACTCCGACTACACCGTTTCTCTTGCAG CCTCCGCCGATTGGTGCAACTTTCAAACCCGAATCTTATGAGTTTGTGCCCTTCTCCAGATTTCCTCATCGTATCACGCCTGGCTTCCCCTTCTTGACAG ATTTTATCGGGAAAATAGTTGCCGCTGGGAGTCCTTCCTATGTCGACCGAGGTGCCACACCTGATCCAGTTCAAACCGTCAATGTTGCTGATGGAAGTGG TTTGGAAATTGAGGTGTCATTATGGTCAGACCTGTCAACTGTCCTTGATGCGGACACTATCCTTCTTAATGACGTGTCCAATCCAGTTATCGTTGCTTTC CTTGGATTCCAAATGTGGAGCTTTAAGGGTAAGACAACAGCTGCCAGTCGCTTGGCCAGCTGTGTTGTACAAAATCCTCAGCATCCCGCTGCTGAATCTC TTCGCTTGCTCTTCACAGGTCAGGAACGGTCTATAACGTACATTATTCCAAAGTTTGATAGTCCTGAGAAGTTGCAGAGGCATGTGCATGAGTCTTACCG GATGATTAGTGAACTTAACGCCATGTATATTTCCGTTTGCGACTCATGTTCTTCGGCAGTTGCTGCAAATGGTGTTGTGTTTTGGTGTTCAAAGCACGAC ACTGTGCTCCCGCTAGATGTCTTTTTTAGGTACCGATTGCAGCTGCTGGTCTCCAATAGGACAACTGAAACCACATTTGTGCTGCTTGGTCATACTGCTG ACAGGATCATGCCCATTCCAGCTACAGACTTGGCCCGCGCCTACCCTGATGATTACGACGAACTCCCGCCACCTCTACAAATCATGATTGGTCAGGAAGT TACCTTTGGGGTCCATTTGCCCCGCAATGTGCGCCTAAATACATATGGGGATTGTACAATTTCAAAAATTTGGGGTCTCTACATGCCCCGTGCACAACTC CTTGCCCAGATGCCGCCCCCACCTCTTGCAAATCATTCGCCTAGCCCTCCAGCGAGGCATGACACACCACTGCCGCCCGACCCCGCATATGTCTATCCTG TTCCGACTTATGAAAACACATCTGCTCCTTCGGCTGACTCCCACCATGATCCTCCTCCTGACCACAGGTACTCCGAGTTGGTCTACACTTTTCAGCTTTC AGGTTCTTCAGTTTGGTCTATGTTTTGTCGTTGTGCGTGTTCATGTGTGAAAACCAACCTTATCTTATCATAG
AA sequence Show only first row Show all	>Lus10003025 pacid=23180842 polypeptide=Lus10003025 locus=Lus10003025.g ID=Lus10003025.BGIv1.0 annot-version=v1.0 MLLHEIVPTEPPAELQLRLEHIWKLCNPAEPAKFFSLGTLWIDSEAIPCAPSPLMWRNAYLSGLSTLLQLIPLDLLGRPKRGCLFPHWLDLTPTTPFLLQ PPPIGATFKPESYEFVPFSRFPHRITPGFPFLTDFIGKIVAAGSPSYVDRGATPDPVQTVNVADGSGLEIEVSLWSDLSTVLDADTILLNDVSNPVIVAF LGFQMWSFKGKTTAASRLASCVVQNPQHPAAESLRLLFTGQERSITYIIPKFDSPEKLQRHVHESYRMISELNAMYISVCDSCSSAVAANGVVFWCSKHD TVLPLDVFFRYRLQLLVSNRTTETTFVLLGHTADRIMPIPATDLARAYPDDYDELPPPLQIMIGQEVTFGVHLPRNVRLNTYGDCTISKIWGLYMPRAQL LAQMPPPPLANHSPSPPARHDTPLPPDPAYVYPVPTYENTSAPSADSHHDPPPDHRYSELVYTFQLSGSSVWSMFCRCACSCVKTNLILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	0	1
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	3.9	0.9018
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	4.2	0.9305
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	4.7	0.8680
AT1G18530			EF hand calcium-binding protei...		Lus10027243 [exp]	5.3	0.8307
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	6.0	0.9305
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	7.3	0.9305
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	8.5	0.9287
AT3G49601			unknown protein		Lus10034691 [exp]	9.2	0.8860
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	9.5	0.9286
					Lus10030116 [exp]	10.1	0.7934

Compare expression of checked genes

Lus10003025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.