Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41620 177 / 1e-48 unknown protein AT1G64180 148 / 2e-38 intracellular protein transport protein USO1-related (.1) AT2G46250 144 / 1e-37 myosin heavy chain-related (.1) AT3G11590 107 / 2e-24 unknown protein AT5G22310 71 / 6e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007858 [exp] 511 / 1e-180 AT5G41620 156 / 1e-42 unknown protein Lus10007857 [exp] 183 / 4e-56 ND 36 / 0.003 Lus10017543 [exp] 186 / 2e-51 AT5G41620 500 / 6e-170 unknown protein Lus10028746 [exp] 184 / 5e-51 AT5G41620 497 / 4e-170 unknown protein Lus10005200 [exp] 98 / 3e-21 AT3G11590 322 / 1e-101 unknown protein Lus10013312 [exp] 97 / 5e-21 AT3G11590 285 / 1e-88 unknown protein Lus10013311 [exp] 97 / 5e-21 AT3G11590 332 / 1e-105 unknown protein Lus10021324 [exp] 78 / 8e-15 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 75 / 9e-14 AT3G11590 587 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166600 [exp] 292 / 6e-91 AT5G41620 345 / 6e-110 unknown protein Potri.014G093400 [exp] 267 / 2e-81 AT5G41620 347 / 8e-111 unknown protein Potri.001G096200 [exp] 209 / 2e-60 AT5G41620 523 / 6e-180 unknown protein Potri.003G135000 [exp] 206 / 1e-58 AT5G41620 494 / 1e-167 unknown protein Potri.004G199500 [exp] 114 / 2e-26 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 107 / 2e-24 AT3G11590 560 / 0.0 unknown protein Potri.009G160900 [exp] 103 / 2e-23 AT3G11590 399 / 9e-132 unknown protein Potri.006G207800 [exp] 98 / 3e-21 AT3G11590 582 / 0.0 unknown protein Potri.011G003200 [exp] 52 / 1e-06 AT1G50660 350 / 1e-110 unknown protein Potri.004G015800 [exp] 51 / 1e-06 AT1G50660 390 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003027 pacid=23180831 polypeptide=Lus10003027 locus=Lus10003027.g ID=Lus10003027.BGIv1.0 annot-version=v1.0 ATGGAGGGAACGGAGAAAGGCGTCTGCATGGAGAGAAATCGTACGAAGAAGAACAAAGGCAAAATCCAGAACCCAGAACCAGAAGGAGAGTTGGGATACC AAAGAGCTGAGCTTGATGATGAAAACTCGACGACGATACAGAGGAATATAAGGGTATTATTGGTTGGGAAAAGGCAAGGCCCATCTACTCCTTCACCCAA TTGGCGCCTGGGTTTCGATTCAGAAAACCCGGTTCGGGAATTAGCCAACCGTTGCGCCGCCGCCGATTCTGTCACTGCCAGGAAACTCTGTGTTATCCTC TGGGAAATTCAACCTAAACTTGAGCTTCCCGTTCCCGGAATAATTTGTCCTGGCAACCGCCGCCTCAAGAAGCTCGATCAGCCAGCAAATGCAGGTCCAT CTGGGATTCTGGATGAGGTACATGACATATTGCTTCAACGAAACAGACGTTACATGTCTCATTTTCCACCCGCTGCAACTCTCAGTAGCTCCTCAGAGGT TGCACCTTATAAACCTGGGGTTGCTCCCTCGGGCACTAAAGGGAAGCCGAGTCATGGTCTTAAGACCTCGAAGGAGCTACACAAGGTGCTGAATCGGATA TGGAGCATCGAAGAGCAGCAAGCATCGAACGTGTCAGTGATGAATGCTTTAAGGATGGAACTGGACCATTCTCGGACACAGATAAAAGGTTTGCTGAAGG AGAAAGAAACTAGTAGGCGAAAAGTCAACACCTTTAAGCACGTGGAGGGCCGAATCAAAGATACCGTCCAGCCGGTCGAAGAAGACGAGAGGAGGTTACG AAGCCGATCAGAGAGCCTGCACAGAAAACTTGCGCAAGAGCTTTCTGAAGTCAAGAGCCGGTTCTCGAATGCTTTAAAAGAGCTCGAAAGGGAAAAGAAC GCACGGTTTGTATTGGAGAGTTTGTGCAACGAGTTTGCCATGGGGATAAAAGATTATGAACAAGAGATTCGAACAATGAGACCCAAACACGATACAGATG ACACCGGAAGGGAAGGAGGCCCGAATAAGTTGATTCTCCACATTTCAGAAGCATGGCTCGATAAGCGACTGCAAACGAAACTATCGAAACATGAAAAGGA AACAGCAGTTGTTGACAAGTTAAGCACAGAGATGGAAGCATATCTCCAAGCGAGCCGAGTTGCTAGATTGCAGAAAGAAAACGAATCAAGGAGAGAGTCC TTCCCCTTGAATGAGCTAGCTGGAAGTGGCCCTCATCGCAGAAATGGCGATCTAGATTCAACAGACAGCAAGCCGGATCATCCCAGCTCCTTTACCAGGC CGATTCTGATCAGAAGCAGCAGCTTGAGGGGAGGCAAAAAGTTTCGGACTGTGTCAAGTCATCATGTCCTTAGTAGACTGATAAGAGACCGTTCCTTGTC GTCTGAAGGTGACAGAATCCATCCTGCGGTATGTCATACTACGAGTAGTCCTGTAAAGAGATGGTCGTCAAAGCTGCCATCTTTGGACTCTGAGGGAAGC ACCCTTAAAGAGAAACTGCTGGAAGCAAGACTGGAAGGCCAGAAATCACGATCGAAACCCTCGAAAGGTTCGTCCTTGTTAGATTGA
AA sequence Show only first row Show all	>Lus10003027 pacid=23180831 polypeptide=Lus10003027 locus=Lus10003027.g ID=Lus10003027.BGIv1.0 annot-version=v1.0 MEGTEKGVCMERNRTKKNKGKIQNPEPEGELGYQRAELDDENSTTIQRNIRVLLVGKRQGPSTPSPNWRLGFDSENPVRELANRCAAADSVTARKLCVIL WEIQPKLELPVPGIICPGNRRLKKLDQPANAGPSGILDEVHDILLQRNRRYMSHFPPAATLSSSSEVAPYKPGVAPSGTKGKPSHGLKTSKELHKVLNRI WSIEEQQASNVSVMNALRMELDHSRTQIKGLLKEKETSRRKVNTFKHVEGRIKDTVQPVEEDERRLRSRSESLHRKLAQELSEVKSRFSNALKELEREKN ARFVLESLCNEFAMGIKDYEQEIRTMRPKHDTDDTGREGGPNKLILHISEAWLDKRLQTKLSKHEKETAVVDKLSTEMEAYLQASRVARLQKENESRRES FPLNELAGSGPHRRNGDLDSTDSKPDHPSSFTRPILIRSSSLRGGKKFRTVSSHHVLSRLIRDRSLSSEGDRIHPAVCHTTSSPVKRWSSKLPSLDSEGS TLKEKLLEARLEGQKSRSKPSKGSSLLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41620			unknown protein		Lus10003027 [exp]	0	1
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	3.5	0.7419
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	4.6	0.7236
AT1G02290			unknown protein		Lus10028606 [exp]	4.8	0.7605
					Lus10012006 [exp]	6.2	0.7510
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004561 [exp]	7.3	0.7534
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	13.8	0.7396
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	14.0	0.7129
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	16.9	0.7175
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	17.7	0.6692
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	17.9	0.7222

Compare expression of checked genes

Lus10003027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.