Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01460 263 / 4e-84 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1) AT4G01190 260 / 2e-83 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1) AT1G21980 220 / 8e-65 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 218 / 3e-64 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G09920 218 / 7e-64 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT2G26420 206 / 8e-60 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G56960 199 / 3e-57 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G60890 199 / 5e-57 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT2G41210 199 / 5e-57 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 198 / 5e-57 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007856 [exp] 749 / 0 AT1G01460 259 / 2e-82 Phosphatidylinositol-4-phosphate 5-kinase, core (.1) Lus10014408 [exp] 229 / 5e-68 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 228 / 2e-67 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 228 / 2e-67 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10029661 [exp] 218 / 6e-64 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10023909 [exp] 213 / 7e-62 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10025636 [exp] 212 / 9e-62 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 211 / 3e-61 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10002734 [exp] 203 / 1e-58 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093300 [exp] 303 / 4e-100 AT1G01460 256 / 2e-81 Phosphatidylinositol-4-phosphate 5-kinase, core (.1) Potri.006G121200 [exp] 222 / 4e-65 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.002G088100 [exp] 210 / 7e-61 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 209 / 9e-61 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 202 / 2e-58 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G196000 [exp] 202 / 4e-58 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G019100 [exp] 201 / 7e-58 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.019G015768 [exp] 199 / 3e-57 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 199 / 4e-57 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.001G027900 [exp] 197 / 3e-56 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase
Representative CDS sequence Show only first row Show all	>Lus10003028 pacid=23180835 polypeptide=Lus10003028 locus=Lus10003028.g ID=Lus10003028.BGIv1.0 annot-version=v1.0 ATGGCAAAGGAGCCTTGCCAGAGACACAGAATCGTTTGGTTTTTCAGCGATATGAAACAACACAAAGTACAGTATGCTAAACAGGACAATAAGCGTCTCC CTCGCTTTGGAAATTCTAATGAGTTTGAGCTTAAGGATTATTGCTCCGAAGTTTTCAGACGCATCCAAGATCTGAAAAATGTTGACAACTGTGAATACAT GCAGTCTGTTTTCACCGATCAGACGTTGAAGGAGATAATTTCATCTAAGAGAACCGGTTGCTTGGGTCCTTTATCAAGGGATGATCGATTTTTCATCAAA ACCTTGCGCAAATCCGAGGTCAAGGCAATCATTGAGATGCTTCCAAGTTATTATTTCCATCTTAAGAAGAACCCATCGTCGTTATTAAGCGCACTGTATG GTGTTCATGTTGTGAAGCCAATTGCAGGTGGTAGCAAGGTGTATTTTGGCGTGTTGTCAAATGTTATTCCATCAGATGTAAACATGTACAGAATTTATGA TCTAAAGGGCTCATCCAGAGGACGTCCTGTTAAAAAGGTTAGAGATCATGTGAATATGATCTCTAAGGATCCAGATTTCGACTTTAGTTTCTATTTGGAT CCACGCGTTCACGAAAGCCTCCTATCGCAAATCAAGAGCGATTGTGAGTTCTTGGAGACTGAGGGTGTAATGGGTTACAGTCTTTGTCTTGGAGTTCCTC TGAAAAATTCATGTCAAGGTACCATTCATTACGGTAGCCTACCCTACAAGAAACCAGTCTCAAATTGCTCTTCTCCTACACATTCAATGGATGGAACGTC TTCAATGGTTTCAGCTGACGGTCTAAGTTCCAAAGCTGACAGCCTGGAGGACTACGAGCTGAATTTCGTCGATACATACGTGGATATGCAGGAGAGTAAG CAAGAAATAAAACTCGGCACGGGGATGTCAGCACGCCCAGTCCATTTGAAATCAGAGCATGAAGGACTAGTGGATCCAGGCCACTGCGAGGTGGTGCTCT ACTTTGCCATTGTTGACATATTTCGGAACTATAGCATGGCTAAGCATATCGAGCATGGTTTCAAGTCGATATGGAAAGATTCACAGTCCATGTCAGCTGT GAATCCTAGGATCTATTCATCACGCTTTCAGGAATTCCTCTTCCAGATATTTCGAGTACAGCATTCTTGA
AA sequence Show only first row Show all	>Lus10003028 pacid=23180835 polypeptide=Lus10003028 locus=Lus10003028.g ID=Lus10003028.BGIv1.0 annot-version=v1.0 MAKEPCQRHRIVWFFSDMKQHKVQYAKQDNKRLPRFGNSNEFELKDYCSEVFRRIQDLKNVDNCEYMQSVFTDQTLKEIISSKRTGCLGPLSRDDRFFIK TLRKSEVKAIIEMLPSYYFHLKKNPSSLLSALYGVHVVKPIAGGSKVYFGVLSNVIPSDVNMYRIYDLKGSSRGRPVKKVRDHVNMISKDPDFDFSFYLD PRVHESLLSQIKSDCEFLETEGVMGYSLCLGVPLKNSCQGTIHYGSLPYKKPVSNCSSPTHSMDGTSSMVSADGLSSKADSLEDYELNFVDTYVDMQESK QEIKLGTGMSARPVHLKSEHEGLVDPGHCEVVLYFAIVDIFRNYSMAKHIEHGFKSIWKDSQSMSAVNPRIYSSRFQEFLFQIFRVQHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	0	1
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10007761 [exp]	3.5	0.8694
AT5G65120			unknown protein		Lus10000581 [exp]	3.9	0.8741
AT3G50780			unknown protein		Lus10016789 [exp]	4.0	0.8383
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	6.8	0.8967
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	7.5	0.8641
AT5G18880			RNA-directed DNA polymerase (r...		Lus10023044 [exp]	8.1	0.8815
					Lus10035529 [exp]	8.7	0.8364
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	10.4	0.8728
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10013697 [exp]	11.0	0.8142
AT3G23255			unknown protein		Lus10011825 [exp]	12.4	0.8578

Compare expression of checked genes

Lus10003028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.