Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61590 526 / 0 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G15710 105 / 1e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 105 / 2e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 91 / 1e-19 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT4G33160 70 / 8e-13 F-box family protein (.1) AT5G42360 59 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42350 59 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49610 58 / 3e-09 F-box family protein (.1) AT3G56470 50 / 1e-06 F-box family protein (.1) AT3G26010 50 / 2e-06 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007855 [exp] 786 / 0 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10031955 [exp] 104 / 2e-24 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 103 / 1e-23 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 92 / 6e-20 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 89 / 7e-19 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 88 / 8e-19 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007755 [exp] 81 / 4e-16 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007740 [exp] 65 / 4e-11 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013215 [exp] 59 / 3e-09 AT5G42350 647 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166500 [exp] 617 / 0 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 587 / 0 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.004G112400 [exp] 107 / 2e-25 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 106 / 4e-25 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 98 / 4e-22 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G057100 [exp] 96 / 3e-21 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 95 / 5e-21 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 94 / 1e-20 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 88 / 9e-19 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.014G016200 [exp] 67 / 4e-12 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10003029 pacid=23180840 polypeptide=Lus10003029 locus=Lus10003029.g ID=Lus10003029.BGIv1.0 annot-version=v1.0 ATGAAGGGAGAAGCATCATGGATCTATCATTGCACTGATGTTGTGGCTAGAGATGCCAAATCATTCTCTGACATCAATGATGATGATGACGATGAAGACT ATGATGCTAATGCTGTTTCCATGGATCTAATCTTGCCTGACGATTTACTGGAACGGATCTTGGCATATCTCCCCATTGCAAGCATCTTCAGGGCGGGTTC CGTGTCCAAAAGATGGCACGAGATTGTGAGTTCGAGGAGGTTCTTATGGAACTTCTCGAACGTCGCGTCCCAAAAGCCTTGGTACTTCATGTTCACAAGC TCCGACGATCCCGTTGGTTATGCCTTTGATCCTGGTCTTAAAAAGTGGCACAACATCGATCTACCTTGCATAAGGACATCGAATTGGTTCGTCACCTCGT CATGTGGGTTGGTTTGCTTCATGGACAATGACAGCAGGAGCGAGTTATATGCCTGCAACCCCATTACCAAATGCTACCGGAAGCTCGAAGGCCCTCCCGG TTCGAAACTCTCCGACTACAGCGCTCTTGCAGTCTCGGTGAACCGAGTCTCACACAACTATACCGTCTCTATTGTGAAGTCTAAGCAAGTACCTAGAGAT TTCCTCCAATGGGATTTCTCGATTTATACCTATAGTTCCGATACCAAGGTCTGGAGCCCTTGCTGGACAGAGGTATTGGTAGGGTGGAGAGGTGGTGATG AAAGTGTTATCTGTAATGGCAATCTATACGTCTTGATTTATTCAACCGGCGGTGCTTATCCTGAAAACAGACACGGCCTTCTAACTTACAAGCTCTCAGG GAGGTATTCTCCCGAAGAGAAGTTGATAAATGGGTTCATTCCAACGCCGTGCCCACTAACCTGCGGGAGGCTGATGAACTTGAAGAACAAACTGGTCATG GTTGGAGGCATTGGGAAGCATGTGAGGCCTGATGTGATTAAAGGGATCGGAATCTGGGTTCTAAACGGTAGGGAATGGCAGGAGATTTCTCGAATGCCAC ACAAGCATTTCCAAGGGTTTGGAGAGCTTGATGATGTCTTTGCTAGCAGTGGCACTGATGAGCTTATATACATCCAGAGCTATGGAGGTCCTTCCCTCCT TGTCTTTGACATGAACCAGAAACAGTGGAAATGGTCGCAGAAGTGCCCTGTTACGAAGAGGTTCCCTCTTCAACTCTTCACTGGTTTCTGTTTCGAACCT AGGCTCGAGATCGCACCATGA
AA sequence Show only first row Show all	>Lus10003029 pacid=23180840 polypeptide=Lus10003029 locus=Lus10003029.g ID=Lus10003029.BGIv1.0 annot-version=v1.0 MKGEASWIYHCTDVVARDAKSFSDINDDDDDEDYDANAVSMDLILPDDLLERILAYLPIASIFRAGSVSKRWHEIVSSRRFLWNFSNVASQKPWYFMFTS SDDPVGYAFDPGLKKWHNIDLPCIRTSNWFVTSSCGLVCFMDNDSRSELYACNPITKCYRKLEGPPGSKLSDYSALAVSVNRVSHNYTVSIVKSKQVPRD FLQWDFSIYTYSSDTKVWSPCWTEVLVGWRGGDESVICNGNLYVLIYSTGGAYPENRHGLLTYKLSGRYSPEEKLINGFIPTPCPLTCGRLMNLKNKLVM VGGIGKHVRPDVIKGIGIWVLNGREWQEISRMPHKHFQGFGELDDVFASSGTDELIYIQSYGGPSLLVFDMNQKQWKWSQKCPVTKRFPLQLFTGFCFEP RLEIAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Lus10003029 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	9.0	0.9141
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	14.8	0.8982
AT4G16360			5'-AMP-activated protein kinas...		Lus10039076 [exp]	16.4	0.8901
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	16.5	0.9042
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	23.4	0.8984
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	27.4	0.8863
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	31.5	0.8796
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	32.7	0.8954
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	35.4	0.8880
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	36.0	0.8918

Compare expression of checked genes

Lus10003029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.