Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017800 [exp] 125 / 3e-37 ND / Lus10007779 [exp] 95 / 7e-25 ND / Lus10014851 [exp] 98 / 4e-24 ND 34 / 0.005 Lus10042979 [exp] 98 / 6e-24 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10026444 [exp] 94 / 1e-22 ND / Lus10029489 [exp] 70 / 4e-15 ND / Lus10006886 [exp] 67 / 3e-13 ND / Lus10027613 [exp] 65 / 1e-12 ND / Lus10007415 [exp] 64 / 4e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003030 pacid=23180827 polypeptide=Lus10003030 locus=Lus10003030.g ID=Lus10003030.BGIv1.0 annot-version=v1.0 ATGAACTCATCCTCCTCCTCCTTTGCTGCTGGAGTCATGGTCGGGACGGTGATGGTGGAGATCGCTATGGACGCGGCCCCGCGAGAGGAGGCCACTGTGG TTCTTGTGCTTGGCGGCGACGGTGGTTGCCGAAACGGAAGGAGCGAATGTGGTGGTGGTGATGGTTGTGGCGTCGAGGGTGTGGCAGTGGATGTAGCTGT GATTTGCTTGGAGCCGTCGTGGGTATTTAGGTGGGAAGCCATTGGTGGCTACATCAAACTTCTCTCAATCGAGAGCTACTCAGTCCTCGCGCGGTGTGCG GATGCAACAACAACAACTGACATCTTATTCACCGGAACATCAGCATCCCTTCTGTTACGCATGCCTCCAGATGAATACGTGACCCTGACTCATCAACAAG AAACTACACTTCTGCTTGGACTGCACGACACCATGTTTGTTCTCGAGGTTTGCCCTGTCGATCCTGGTCACATCGACCAAGCAAAGTTTGTCGCTACTAA TCTTTGGGATCCCGTTGTTGCTTTCTACTAG
AA sequence Show only first row Show all	>Lus10003030 pacid=23180827 polypeptide=Lus10003030 locus=Lus10003030.g ID=Lus10003030.BGIv1.0 annot-version=v1.0 MNSSSSSFAAGVMVGTVMVEIAMDAAPREEATVVLVLGGDGGCRNGRSECGGGDGCGVEGVAVDVAVICLEPSWVFRWEAIGGYIKLLSIESYSVLARCA DATTTTDILFTGTSASLLLRMPPDEYVTLTHQQETTLLLGLHDTMFVLEVCPVDPGHIDQAKFVATNLWDPVVAFY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003030 [exp]	0	1
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10000841 [exp]	2.0	0.8274
AT3G02645			Plant protein of unknown funct...		Lus10016396 [exp]	3.6	0.8424
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	4.0	0.8163
AT5G14240			Thioredoxin superfamily protei...		Lus10014596 [exp]	7.3	0.8089
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	10.8	0.8213
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	13.7	0.7929
AT1G18530			EF hand calcium-binding protei...		Lus10027243 [exp]	15.9	0.7405
AT4G14746			unknown protein		Lus10025761 [exp]	18.5	0.7191
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	19.2	0.7924
					Lus10000350 [exp]	20.0	0.6380

Compare expression of checked genes

Lus10003030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.