Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01140 54 / 3e-08 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007859 [exp] 265 / 2e-87 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 51 / 6e-07 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10028743 [exp] 50 / 1e-06 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166900 [exp] 79 / 1e-16 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 74 / 6e-15 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 52 / 2e-07 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 52 / 3e-07 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 46 / 2e-05 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10003033 pacid=23180828 polypeptide=Lus10003033 locus=Lus10003033.g ID=Lus10003033.BGIv1.0 annot-version=v1.0 ATGCCTCCATTCAACGTCACGATCGTCGTCCTCGTCATCCACGTCATCCTCCTCCACGAAATCCCACCCATCCAAGCCTCCTCCTCGTCATCATCTCCGC CGTACGATTTCAAGCCCTTGGAGTTCCTAATCCGATCAGGTGCAATGACAGCGTTAATCTCCCAACCCACCGGAATCATCGCCGACGTTCCTCTCCCGTC GAACTACTCCACCGTCTCCGCCTCCGTCATCCACCTCCGCACACGCCGATTCCACGACCTTGGAACCGCCGCCAGCACATTGTTCATCTTCCCTCCCGGG ATCATTCCTTACCCTTTCCCGCCGCGGATCGTGATGGTGTTCTTCAATTTAGGGGCGGAGCTATCTACGAAATACTTCCACGTTCCGGGGTACTCGCTAG TCGCTTCGGTAATCGGCTTCTCCGCCTTCGACGCTGCCGCGAATTTCTCGGATCCGGCGGTGGAGAGCCTGCAACTCACCTTCTCGTCCGTCGCCGTCGG ATCGATACTGGCCAGGATCCCGCACCAGTCACCACTGGCGGCCGAGGCAGGGGAGGAGATGAAGTGCGTGAAGTTTGTCGCGGGGCAAGGGCTGGTTCAG CTGAGGAACGTGACGGGAGATTTTATATGTGAGACGGAAGGGAGCGGGAAGTTTACGGCAGTGGTGTCGGTAAGGGAGGAGGCGGAGGAGGAGAAGGCAG AGGTGATTAGGAAGGTGATCGTGGCGGCGGCAGGTGCGTTGGGTGCGATCTGCTTGTGTATAGGTGAGACGGAGGGGAGCGGGAAGTTTACGGCAGTGGT GTCGGTAAGGGAGGAGGCGGAGGAGGAGAAGGCAGAGGTGATTAGGAAGGTGATCGTGGCGGCGGCAGGTGCGTTGGGTGCGATCTGCTTGGTGGTGATA TGTGCAACGAGTAATAAGATGGTGAGGAGTCATCGGATTGAGAAGATGGCTGGGGAAGCGGAGAATGGGTTGGCGTTCGATACGACGTAG
AA sequence Show only first row Show all	>Lus10003033 pacid=23180828 polypeptide=Lus10003033 locus=Lus10003033.g ID=Lus10003033.BGIv1.0 annot-version=v1.0 MPPFNVTIVVLVIHVILLHEIPPIQASSSSSSPPYDFKPLEFLIRSGAMTALISQPTGIIADVPLPSNYSTVSASVIHLRTRRFHDLGTAASTLFIFPPG IIPYPFPPRIVMVFFNLGAELSTKYFHVPGYSLVASVIGFSAFDAAANFSDPAVESLQLTFSSVAVGSILARIPHQSPLAAEAGEEMKCVKFVAGQGLVQ LRNVTGDFICETEGSGKFTAVVSVREEAEEEKAEVIRKVIVAAAGALGAICLCIGETEGSGKFTAVVSVREEAEEEKAEVIRKVIVAAAGALGAICLVVI CATSNKMVRSHRIEKMAGEAENGLAFDTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01140			Protein of unknown function (D...		Lus10003033 [exp]	0	1
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	7.8	0.7819
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	13.0	0.7782
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	14.3	0.7668
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	17.3	0.7724
AT4G16490			ARM repeat superfamily protein...		Lus10038811 [exp]	30.0	0.7442
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	30.3	0.7358
					Lus10016421 [exp]	31.8	0.7448
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	41.2	0.7208
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	44.5	0.7324
AT3G57200			unknown protein		Lus10018036 [exp]	49.5	0.6910

Compare expression of checked genes

Lus10003033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.