Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46270 321 / 1e-106 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 191 / 2e-56 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G35530 149 / 2e-40 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 99 / 2e-22 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT4G36730 90 / 7e-20 bZIP GBF1 G-box binding factor 1 (.1.2) AT3G30530 56 / 3e-09 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G38800 54 / 1e-08 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT5G60830 54 / 2e-08 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT5G15830 52 / 9e-08 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT2G04038 50 / 3e-07 bZIP ATBZIP48 basic leucine-zipper 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005146 [exp] 753 / 0 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10014324 [exp] 132 / 8e-35 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10024030 [exp] 89 / 2e-19 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10041720 [exp] 88 / 5e-19 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10026033 [exp] 87 / 2e-18 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10029101 [exp] 59 / 1e-09 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10013059 [exp] 57 / 4e-09 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10011557 [exp] 52 / 4e-08 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10021369 [exp] 49 / 3e-06 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167100 [exp] 395 / 2e-135 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G094200 [exp] 371 / 1e-125 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.003G097600 [exp] 151 / 4e-41 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.001G136000 [exp] 102 / 9e-24 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.005G126000 [exp] 89 / 2e-19 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.007G029400 [exp] 88 / 8e-19 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.004G111100 [exp] 57 / 2e-09 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.015G047700 [exp] 55 / 2e-08 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.017G106700 [exp] 54 / 2e-08 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.006G277800 [exp] 54 / 6e-08 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor CL0018 [flax] [poplar] PF07777 [flax] [poplar] MFMR G-box binding protein MFMR
Representative CDS sequence Show only first row Show all	>Lus10003034 pacid=23180841 polypeptide=Lus10003034 locus=Lus10003034.g ID=Lus10003034.BGIv1.0 annot-version=v1.0 ATGGGAAATAACGAGGACGGAAAGTCATCCTCTAAGTCTGAAAAATCATCTTCACCACCTCATACTGCACCGCCGGAGCAAGCTAATATTCATGTGTATC CTGACTGGGCAGCTATGCAGGCTTATTATGGTCCACGAGTCGCCCTTCCTCCATATTACAATCCAGCTGTGGCTTCGGGCCACCCTCCTCATCCATATAT GTGGGCTCCGCCCCAGCATATGATGCCCCATTATGGAGCACCGTATGCAGCAATCTACCCGGGAGGAGTATATGCCCATCCAGCAGTTCCGATGGGACAG CACCCACACGGCCCTGGTGCTTCGGCATCACCTGCTGTTGCAGTACCCCCGAGTGCTGAAACACCAACGAAGTCTTCAGGCAACACAGATCAAAGTTTGA TGAAAAAGTTGAAAGGATTTGATGGGCTTGCTATGTCCATTGGAAATGGTAATGGTACTGCTGAAAGTGGTGACGGCGGTGACCACAGGATGTCTCAGAG TGTGGACACTGAAGGTTCCAGTGATGGTAGTGATGGGAACACTGCTGGGGGAAGGAAGAGAAGTTATGAAGGGAGACCTGCAGTTGGTACAGTTCATTCT CTACTAAACTGTCGAGGCCTTGTTAAGCTTTTTAATAGTTTCCTTGGTTACAACTTTCAAAGTTTGCTGTTTCTAAGGGGAGATTTGAAAACCGAGGGCC ATCCCACTGATGGTAGCAATTCTTCTGACAAAGATGGTGCTGTAACTGTCGCATCATCGAGAAAATCAACAACACCTCTTGCTGTTATGAAATCATCAGA CCCTAGAACTCCTAGCATGACTGCTGCTGGTAATGCTCCGCAGCCATGTGGGGTGGTGCCTTCCGAGACTTGGTTACAGTATCCAGCTGCGAATCCGAAT GATAGAGAGCTGAAACGTGAGAGAAGAAAACAGTCCAATCGAGAATCTGCGAGGAGATCAAGACTGAGGAAGCAGGCGGAAACTGAGGAACTTGCACGCA AAGTTGACGCCTTGAACAACGAGAACTTGGCACTGAAATCTGAAATAAATCAACTGAAAGAGAAATCAGACCAGTTGAGAGTAGAGAATGCGACTTTAGT GGACAAGCTCAAGACTGCAGAACTAGGACAGACTCAGGAGATAGGTTGGAACAACAACAACGCTGCTGCTGATGAGCAGATGGGATCAGCTGACAGTACA GAGAATCTCCTATCAAGGGTAAATAATTCTTCAGCAGCCTGTGTAGAGGAAGAGGGGAATGTGGAGGACCGCAACCCACCGAAATCGGGTGCCAAGCTTC GTCAGCTGTTGGATGCCAGTCCCAGGGCCGACCCGGTGCCTGCTGGTTGA
AA sequence Show only first row Show all	>Lus10003034 pacid=23180841 polypeptide=Lus10003034 locus=Lus10003034.g ID=Lus10003034.BGIv1.0 annot-version=v1.0 MGNNEDGKSSSKSEKSSSPPHTAPPEQANIHVYPDWAAMQAYYGPRVALPPYYNPAVASGHPPHPYMWAPPQHMMPHYGAPYAAIYPGGVYAHPAVPMGQ HPHGPGASASPAVAVPPSAETPTKSSGNTDQSLMKKLKGFDGLAMSIGNGNGTAESGDGGDHRMSQSVDTEGSSDGSDGNTAGGRKRSYEGRPAVGTVHS LLNCRGLVKLFNSFLGYNFQSLLFLRGDLKTEGHPTDGSNSSDKDGAVTVASSRKSTTPLAVMKSSDPRTPSMTAAGNAPQPCGVVPSETWLQYPAANPN DRELKRERRKQSNRESARRSRLRKQAETEELARKVDALNNENLALKSEINQLKEKSDQLRVENATLVDKLKTAELGQTQEIGWNNNNAAADEQMGSADST ENLLSRVNNSSAACVEEEGNVEDRNPPKSGAKLRQLLDASPRADPVPAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Lus10003034 [exp]	0	1
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	3.7	0.8155
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	12.1	0.7790
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	17.7	0.7286
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10008939 [exp]	19.4	0.7025
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	22.6	0.7532
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	32.3	0.7676
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	32.9	0.7157
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	35.7	0.7302
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10029547 [exp]	40.8	0.7070
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	48.9	0.7520

Compare expression of checked genes

Lus10003034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.