Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61620 348 / 7e-122 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 83 / 1e-18 3'-5'-exoribonuclease family protein (.1) AT3G46210 67 / 8e-13 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT3G07750 40 / 0.0007 3'-5'-exoribonuclease family protein (.1.2) AT1G60080 40 / 0.0008 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005148 [exp] 528 / 0 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10000255 [exp] 283 / 3e-97 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10037395 [exp] 93 / 3e-22 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10041318 [exp] 79 / 6e-17 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10037991 [exp] 60 / 3e-10 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10009221 [exp] 59 / 7e-10 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10034605 [exp] 42 / 0.0003 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10021789 [exp] 42 / 0.0004 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094300 [exp] 403 / 6e-144 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.004G212500 [exp] 95 / 5e-23 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 90 / 5e-21 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.018G043600 [exp] 67 / 9e-13 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10003036 pacid=23180830 polypeptide=Lus10003036 locus=Lus10003036.g ID=Lus10003036.BGIv1.0 annot-version=v1.0 ATGGAGTTCGTCAGCCCCGAAGGACTCCGTCTCGACGGCCGCCGTCCTATGGAAATGAGGCAGCTTAGAGCAGAGATTGGTGCTGTGGCAAGAGCCGACG GGTCTGCTGTTTTTGAAATGGGCAACACCAAAGTAATTGCTGCTGTGTATGGTCCTAGAGAGGTCCAGAACAAGAGCCAGCTGAATAATGACCAGGCATT GGTGAGATGCGAGTATACAATGGCTAATTTCAGTACTGGTGACCGCAAGCGAAAACCCAAGGGAGATAGGCGATCAACAGAGATATCTTTAGTTATCCGT CAGACTATGGAAGCCTGCATATTGACTCATTTAATGCCCCGTTCTCAGATTGATATCTATGTCCAAGTTCTTCAAGCCGATGGAGGTGAGTGTAAACAGT CTCACTTTTTGAAATTGGTTTACAACGTTGCTGGAGAATCATCCAGATGCTATTTCTTTGTGGTGCTGAAATATCTACCTGTAGGAACTAGATCTGCATG TATAAATGCTGCTACATTGGCCCTAGCTGATGCTGGGATCCCAATGTCCGACCTTGTGACTTCCTGCAGTGCTGGTTACCTCAACAGCACTCCTCTGCTC GATCTGAATTATCTCGTAGATAGCGCTGGAGGTCCTGATGTTACCGTCGGTATTCTACCAACGCTAGACAAAGTCACCCTTCTTCAGATGGATGCCAAGT TGCCAGTTGATATCCTTGAAAACGTTATGCAACTCGCAACCGAAGGCTGCAAGGCGATAGCAATTTACATACGCGAGATATTGCTTGAGAACACCAAGAA CCTAGAGTATCGACGGGGCATATGA
AA sequence Show only first row Show all	>Lus10003036 pacid=23180830 polypeptide=Lus10003036 locus=Lus10003036.g ID=Lus10003036.BGIv1.0 annot-version=v1.0 MEFVSPEGLRLDGRRPMEMRQLRAEIGAVARADGSAVFEMGNTKVIAAVYGPREVQNKSQLNNDQALVRCEYTMANFSTGDRKRKPKGDRRSTEISLVIR QTMEACILTHLMPRSQIDIYVQVLQADGGECKQSHFLKLVYNVAGESSRCYFFVVLKYLPVGTRSACINAATLALADAGIPMSDLVTSCSAGYLNSTPLL DLNYLVDSAGGPDVTVGILPTLDKVTLLQMDAKLPVDILENVMQLATEGCKAIAIYIREILLENTKNLEYRRGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10003036 [exp]	0	1
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	7.2	0.8531
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	8.6	0.8562
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10018991 [exp]	12.0	0.8292
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	12.8	0.8440
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	14.1	0.8356
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	16.3	0.8425
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	17.1	0.8392
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	22.1	0.8288
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	23.0	0.8370
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	23.5	0.8499

Compare expression of checked genes

Lus10003036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.