Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46370 762 / 0 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) AT4G03400 589 / 0 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT2G23170 414 / 3e-138 GH3.3 Auxin-responsive GH3 family protein (.1) AT4G37390 411 / 5e-137 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT4G27260 407 / 1e-135 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT5G54510 399 / 2e-132 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT2G14960 393 / 4e-130 GH3.1 Auxin-responsive GH3 family protein (.1) AT1G59500 393 / 5e-130 GH3.4 Auxin-responsive GH3 family protein (.1) AT1G23160 385 / 2e-127 Auxin-responsive GH3 family protein (.1) AT1G48660 383 / 2e-126 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005151 [exp] 1120 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10039797 [exp] 556 / 0 AT4G03400 769 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 397 / 1e-131 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 395 / 1e-130 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 386 / 6e-127 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 383 / 1e-125 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 380 / 4e-125 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10018565 [exp] 378 / 5e-124 AT4G03400 495 / 1e-169 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 369 / 3e-120 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168200 [exp] 909 / 0 AT2G46370 788 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.014G095500 [exp] 909 / 0 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.019G103500 [exp] 605 / 0 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.013G144300 [exp] 598 / 0 AT4G03400 852 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 412 / 2e-137 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 406 / 4e-135 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 399 / 1e-132 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 395 / 1e-130 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 390 / 6e-129 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 383 / 4e-126 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10003039 pacid=23180829 polypeptide=Lus10003039 locus=Lus10003039.g ID=Lus10003039.BGIv1.0 annot-version=v1.0 ATGATGTTAGAGAAGAGGATGGAGCTAGTCGACACAAGCAAGGTCATAGAAGAATTCGAAGCAATGACGAAAGATGCTGAGAGTGTACAGAGGGAGACTC TGAAGAAGATCTTGGAGGACAATGGTTCAGCTGAGTACCTAAAGAATCATGGCCTTGATGGCAGAACTGACCCCCTGAGTTTCACTTCTTGTGTTCCTCT TGTGACTCATAACGATTTGGAGCCTTATATCCAGAGAATTGCTGATGGTGACTCTTCCCCTATTCTCACTGGAAAACCTATAACCACCATTTCCTTGAGT TCTGGTACTACTCAGGGGAAACCAAAGCTTATACCTTTCAATGATGAACTGATGGATACTACCCTGCAGATATATACAACTTCTTTTGCTTTTAGAAGCA GAGATTTCCCACTTGGAAATGGGAAGGCTTTACAGTTCATCTACAGCAGCAAGCCGGGGAAGACGAAAGGGGGATTGATGTCGGGGACTGCTACGACTAA CGTGTTCCGGAACGTTCTATTTAAGCAGGCAATGAGGGCTCTTCAGTCCCAGTGTTGCAGCCCTGACGAGGTCATTTTCGGGACGGACTTCCAGCAGTCA TTGTACTGCCATCTATTGTGCGGCCTTATTTTCCGGGAGGAGATTCAGTTCGTGTGTTCGACCTTTGCTCATAGCATAGTTCTTGGATTCCGGACATTTG AGGAAGTTTGGCAAGAGCTCTGCTGCGACATAAGAGAAGGCGTGCTTAGCAGCGGAGTCACGACCCCAGCAGTGAGAACAGCCATGATGAAGTTGCTTAA ACCGGACCCCGAATCAGCTGACTTGATCCATGAGAAGTGCGTGGGGTTGAGTAATTGGTACGGGTTGATACCGCAGCTTTTCCCCAACGTGAAGTATGTG TATGGCATTATGACCGGCTCCATGGAGCCTTATCTGAAGAAACTGAGGCACTACGCAGGGGATGTCCCTTTGTTGAGTGCTGATTATGGTTCTTCGGAAG GGTGGATCGGAGCGAATGTCAACCCGAATCTACCCCCTGAATCCGCTACGTTCGCTGTTCTCCCCAATATAGGATATTTCGAGTTCATCCCTCTCGGTCA GAATCCTGACGTTAAGCCCTTGAGTCTGACTCAAGTTAAGATCGGTGATGAGTACGAGGTGGTCCTCACAAATGTCGCAGGTTTGTACAGGTACAAGCTA GGGGACGTAGTGAAAGTGATGGGGTTCCACAACTCGACCCCGGAACTTAAATTCGTGTGCAGGAGAAACTTACTACTGACGATAAACATCGACAAGAACA CCGAAAAGGACTTGCAGCTAGCGGTGGAAGAAGCAGGGAAGCTTCTAGCAGGGGAGAAGCTGGAAGTGGTAGATTTCAGCAGCCAAGTAGACTCATCTTC GGACCCGGGGCACTACGTAATATTCTGGGAAGTCAACGGAGAACCCAGACAGGAAGTGTTGAGGGAGTGTTGCAGTAAGCTAGACAAGTCCTTTGTCGAT CTGGGCTACATCAGCTCGCGGAGGGTGAAGACTATCGGACCTTTGGAGCTCCGGGTGGTGAAGAGGGGAACTTTCCAGAAGATTCTGGATCATTACCTGG GATTGGGAGGCGCCGTGAGTCAGTTCAAGACGCCCAGGTGTGTTGGGCCGATGAACAAAGTTGTGTTGGAAATCTTGTGCAGCAATGTTGCTCAAACTTT CTTCAGTACTGCTTATGATTAG
AA sequence Show only first row Show all	>Lus10003039 pacid=23180829 polypeptide=Lus10003039 locus=Lus10003039.g ID=Lus10003039.BGIv1.0 annot-version=v1.0 MMLEKRMELVDTSKVIEEFEAMTKDAESVQRETLKKILEDNGSAEYLKNHGLDGRTDPLSFTSCVPLVTHNDLEPYIQRIADGDSSPILTGKPITTISLS SGTTQGKPKLIPFNDELMDTTLQIYTTSFAFRSRDFPLGNGKALQFIYSSKPGKTKGGLMSGTATTNVFRNVLFKQAMRALQSQCCSPDEVIFGTDFQQS LYCHLLCGLIFREEIQFVCSTFAHSIVLGFRTFEEVWQELCCDIREGVLSSGVTTPAVRTAMMKLLKPDPESADLIHEKCVGLSNWYGLIPQLFPNVKYV YGIMTGSMEPYLKKLRHYAGDVPLLSADYGSSEGWIGANVNPNLPPESATFAVLPNIGYFEFIPLGQNPDVKPLSLTQVKIGDEYEVVLTNVAGLYRYKL GDVVKVMGFHNSTPELKFVCRRNLLLTINIDKNTEKDLQLAVEEAGKLLAGEKLEVVDFSSQVDSSSDPGHYVIFWEVNGEPRQEVLRECCSKLDKSFVD LGYISSRRVKTIGPLELRVVKRGTFQKILDHYLGLGGAVSQFKTPRCVGPMNKVVLEILCSNVAQTFFSTAYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	0	1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	1.7	0.9566
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	1.7	0.9589
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	2.4	0.9585
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10029172 [exp]	4.7	0.9306
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	6.3	0.9457
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	6.9	0.9394
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	7.3	0.9423
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	7.7	0.9418
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	7.9	0.9426
AT5G49960			unknown protein		Lus10035805 [exp]	8.4	0.9381

Compare expression of checked genes

Lus10003039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.