Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61670 468 / 3e-152 Protein of unknown function (DUF3133) (.1) AT2G46380 415 / 1e-132 Protein of unknown function (DUF3133) (.1) AT4G01090 305 / 2e-91 Protein of unknown function (DUF3133) (.1) AT1G01440 288 / 1e-85 Protein of unknown function (DUF3133) (.1) AT2G23460 62 / 2e-09 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 60 / 6e-09 XLG2 extra-large GTP-binding protein 2 (.1) AT5G05190 58 / 3e-08 Protein of unknown function (DUF3133) (.1) AT1G31930 57 / 5e-08 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT3G56410 56 / 1e-07 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005153 [exp] 1654 / 0 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10001910 [exp] 272 / 1e-79 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 241 / 8e-68 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10019655 [exp] 58 / 4e-08 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10030508 [exp] 57 / 6e-08 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10000743 [exp] 56 / 1e-07 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10012863 [exp] 53 / 9e-07 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10012124 [exp] 51 / 4e-06 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10010421 [exp] 51 / 6e-06 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095700 [exp] 862 / 0 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 459 / 4e-147 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1) Potri.003G137700 [exp] 434 / 7e-138 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.005G131200 [exp] 64 / 5e-10 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 62 / 2e-09 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.001G135300 [exp] 56 / 1e-07 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 54 / 6e-07 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.019G061400 [exp] 52 / 3e-06 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.004G148300 [exp] 48 / 3e-05 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 48 / 3e-05 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11331 [flax] [poplar] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10003040 pacid=23180838 polypeptide=Lus10003040 locus=Lus10003040.g ID=Lus10003040.BGIv1.0 annot-version=v1.0 ATGGCGGAACCCACGAATGTGAGGCTAGTACGCTGCCCGAACTGCAAAACCCTTCTGCCGGAGCCCGCTAATTGCTCCGTTTACCGCTGCGGTGGATGCC GCGCCGTTCTCCGAGTGAAAAATGAAGGCGAGGAGCTGAGGGAAGCGCAATCAGAGAAATCCACTGAAGAAAGGGTTTCCGGAACTGGGAGTACCAGTAG CTTGCAGAACTCTGCAGAGAAGCAGCATGAGGATGTGAGTGAGGATGCCTCTGAAAGTGATGTCAAGTCCGACTCTGCGAAATGCCAAGAGAAGGAGCCT GGCATTGCCTGTGATGATGGTGGATGCCAGGGCGAGGGCTCTAAGCCCTTGAGTGGTAAATTGGTTGTTGAGGATGGTCTCAGTGTGGAGTTGGACAAAT GTGGGATGGTTGATGAAGTAGGAGGAGAGCATGTTGATCTGAATTCAGGGATTCGGAAATCCGGAAGGATGTCTGGAAGGAGTCAACGAGCAGAGAGAGA TGAAGCAGAGGGGTTTCGGAGGAGCATGAAAACTGAGGTTGAAGAAGGTGTACGGTTTTCTACTTGGAAACATCCAGGTGAGGGTCCATCCAGTTATGGT TATGGTTATGGGGAACCGTTGAGGAACCGTGATGAAGAAGTTGAAGCAAATAGGGCTCAGTACCTTGAGAAAGATAGGGCAGAACTTATGAGGAAGCTGG ATGAGCTGAAGGAGCACCTAAGCAGGTCTTGTGAAGTCGGTGACAAACCAAAGGAAAAGGTTCCTCTTGGTGGGAGAGTGGTTCATCCAGATCCTTATGG TGGTTCTTCAGATGCTTGGTTTCCTGGTGGTTCCTCAGCAGCTGATAAGTATTCACTGGGGTTAAATGCTTCAGCTAAATACACCAGGTCCTCTTCCTCT GTCAGCCATTATCCGGAGCCTTTTCCTTACAATAGAGGCCGTGACATGAATATGCACAACTTCGATCCTTCAATTAACACCTCCCGTCATCTTCCTGTTT ATGAATATCCATATGGCTCCCAGATGATGAAGAGACCTCCTCAGCAGTTCCCAGGTCATTACGGACCTGGATCTCGTCAGTATATTTCTGGACATTACTT GGATGGTAATCCTGATGTTTTCGAGCCATACCAACCTAATGCACCTTTGGATCTCCCTCCATGTTCTTGTCTCCATTGCTACGAAAAACATCAAGGAAAT CTGCCTCCAGTTCCACCCACTCAACGTTGCCATGACATTTCAAAAGATTCCATGGTCTACAACCAAGAAAATCCTGGGATGTTTGGCGCAAATCCTCATA ATTCCAGAACTAAGGTTGCTTCATTCAATAACCGTGGTCTCCATTCCCATGGGAGGTGGCCAAGTCATCCTCATAGAGTGGTCTTAGCTAGTGGCGACCA ATGTCGTCGTCCTGTAGCTGGCGGGGCACCTTTTTTCACTTGTTCCAATTGCTCTGAACTGTTGCAACTTCCCAAGAGAATACTGTCTATGGCTAAAAAT CAGCCGAAGATTCGATGTGGTTCCTGTTCAGCAGTTATTGATCTGGCTTTTGTGAACCAGAAGCTTGTCCTTTCTGCTAGGACTAACGGGAAACAATCAT CTCCTCTGGCCGATGATAGCTCAACTGAGTTTGTGAAATACAATGCTTCTTATTCGCACCATCGGATGAACCATATGAATGTTGGTTTCTCGTCAGATGA TTATGGTACCTCTGGTTTTGACTTCCAAACAGTTGATACTGATCTTCACCCTACTGCATCGTCCATGGGCCAGCCGGTGAAGTCAAGCAGGCCTGAGGAG ATGCGGAGCCTCCCTTCCTCGTCTCCAACCTCGTCTCCAACCTCGTCGGAGTGTGAAGATAACCCAGACCTTGTTCAACAACCAATAAAGTCTACTCTTG CTGCATCGCTGGCCAATTCGCCACTACATCAGCAATTTGATTACTCTTCCAATAACCATGCTGTTAATCGACTGGGGAAGGGAAATCGAAGTAGTCATTC AGATCAAGAAAAGGTGACGAACAGAACAACCGCCCGTCAGAATTCTATGAAAGAGGCGTCTTTGGCTTCTGAGATGGATGTTTCATTCAATGATTATGGC AATGGTGAGAATTTCCATAACTATGGGGATGATGCTGGTACAGAAGACAATCAGTTGAAAACAGGCAAAGGGAATGAATCATTTCTTGCAAACATCATCA AGAAGAGCTTTAAGGTTACTAAATCTAATCAAGTAGACTCTCGCGGTAAAAGCAGTGTTTTCGTAAATGGGCATCCCGTACCAGATCGAGTGGTTCGAAA GGCTGAGAAGGTTGCTGGACAAATTCATCCTGGACAATATTGGTATGATTTTCGAGCTGGATTTTGGGGAGTCATGGGAGGACCTTGCGTTGGTATCATA CCGCCGTTTATCGAAGAACTGAATTATCCCATCCCTGAGAACTGCGCTGGTGGGAATACGGGTGTGTATGTGAATGGAAGAGAACTTCACCAACAGGATC TTGATTTGCTCTCCACTAGAGGACTCCCAACTGAGAGGGATAGATCATACATAATCGAGATCTCCGGTAGAGTTCTCGATGAAGATACTGGGGAAGAGCT CGACAGGTTAGGCAAACTTGCTCCGACAATCGAAAGGGTGAAGCGTGGATTCGGGATGAAAGCTCCGAAAGCTGTTCATAATGTCTAG
AA sequence Show only first row Show all	>Lus10003040 pacid=23180838 polypeptide=Lus10003040 locus=Lus10003040.g ID=Lus10003040.BGIv1.0 annot-version=v1.0 MAEPTNVRLVRCPNCKTLLPEPANCSVYRCGGCRAVLRVKNEGEELREAQSEKSTEERVSGTGSTSSLQNSAEKQHEDVSEDASESDVKSDSAKCQEKEP GIACDDGGCQGEGSKPLSGKLVVEDGLSVELDKCGMVDEVGGEHVDLNSGIRKSGRMSGRSQRAERDEAEGFRRSMKTEVEEGVRFSTWKHPGEGPSSYG YGYGEPLRNRDEEVEANRAQYLEKDRAELMRKLDELKEHLSRSCEVGDKPKEKVPLGGRVVHPDPYGGSSDAWFPGGSSAADKYSLGLNASAKYTRSSSS VSHYPEPFPYNRGRDMNMHNFDPSINTSRHLPVYEYPYGSQMMKRPPQQFPGHYGPGSRQYISGHYLDGNPDVFEPYQPNAPLDLPPCSCLHCYEKHQGN LPPVPPTQRCHDISKDSMVYNQENPGMFGANPHNSRTKVASFNNRGLHSHGRWPSHPHRVVLASGDQCRRPVAGGAPFFTCSNCSELLQLPKRILSMAKN QPKIRCGSCSAVIDLAFVNQKLVLSARTNGKQSSPLADDSSTEFVKYNASYSHHRMNHMNVGFSSDDYGTSGFDFQTVDTDLHPTASSMGQPVKSSRPEE MRSLPSSSPTSSPTSSECEDNPDLVQQPIKSTLAASLANSPLHQQFDYSSNNHAVNRLGKGNRSSHSDQEKVTNRTTARQNSMKEASLASEMDVSFNDYG NGENFHNYGDDAGTEDNQLKTGKGNESFLANIIKKSFKVTKSNQVDSRGKSSVFVNGHPVPDRVVRKAEKVAGQIHPGQYWYDFRAGFWGVMGGPCVGII PPFIEELNYPIPENCAGGNTGVYVNGRELHQQDLDLLSTRGLPTERDRSYIIEISGRVLDEDTGEELDRLGKLAPTIERVKRGFGMKAPKAVHNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	0	1
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	1.0	0.9640
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	4.5	0.8962
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	6.0	0.8786
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	7.2	0.8474
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	7.2	0.8682
					Lus10039387 [exp]	9.9	0.8780
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	12.0	0.8999
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	14.8	0.9053
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	18.0	0.8486
AT5G62960			unknown protein		Lus10042109 [exp]	20.5	0.8329

Compare expression of checked genes

Lus10003040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.