Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25380 268 / 1e-89 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT2G47490 247 / 3e-82 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT5G66380 127 / 2e-35 ATFOLT1 folate transporter 1 (.1) AT2G39970 85 / 2e-19 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT4G01100 84 / 4e-19 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G46800 81 / 5e-18 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT3G55640 80 / 1e-17 Mitochondrial substrate carrier family protein (.1) AT4G32400 80 / 2e-17 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G48970 76 / 3e-16 Mitochondrial substrate carrier family protein (.1) AT5G01340 76 / 4e-16 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034104 [exp] 377 / 2e-133 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 241 / 1e-79 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10032365 [exp] 89 / 1e-20 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 88 / 2e-20 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 88 / 2e-20 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 87 / 3e-20 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10021497 [exp] 86 / 9e-20 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 84 / 2e-19 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10022597 [exp] 84 / 5e-19 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121500 [exp] 292 / 5e-99 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 272 / 2e-91 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.002G200900 [exp] 262 / 8e-88 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G125600 [exp] 258 / 2e-86 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.007G019000 [exp] 114 / 1e-30 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.014G095400 [exp] 87 / 3e-20 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G060900 [exp] 86 / 6e-20 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 86 / 1e-19 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 86 / 3e-19 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 84 / 6e-19 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10003041 pacid=23154544 polypeptide=Lus10003041 locus=Lus10003041.g ID=Lus10003041.BGIv1.0 annot-version=v1.0 ATGGTTGGGGATGGTAGTAGCCAATTAAGTGTTGGTCGAAACATGATAGCTGCTGCTGGGGCTGGGGCTGCCACTGCCATCAGTACAAATCCATTATGGG TTGTGAAAACTCGGCTCCAAACGCAGGGAATGAGACCGGGTGTGGTTCCATACACAAGCATATTCTCCGCTCTAAGAAGAATAACTCGTGAAGAAGGTCT GCGGGGGCTATATAGTGGTATTCTGCCTTCCTTGGTGGGGATAAGTCACGTTGCGATTCAGTTTCCTGCATACGAAAAGATCAAGTCTTATATGGCAGAT AGGGATAACACAACAGTCGATGAGCTAAGTCCTGGGGAAGTAGCGATTGCTTCGTCAGTAGCTAAAGTTGTAGCTTCCATAACAACTTATCCCCACGAGG TTATACGTTCGCGGCTGCAGGAGCAGGGGCAGGTTAGGGGTTCTCAGGTTAGGTATAACGGCGTTGTTGATTGCGTTAGGAAGGTGTTTTTGAAGGAAGG GGTACCGGGATTCTACCGTGGTTGTGCGACTAATTTAATGAGGACTACTCCGTCGGCTGTCATTACGTTTACCAGCTACGAAATGATACATCGAGTACTG GAGCGCCTTGTGTCTGGAAGCATTCATAGCCTCAACGGGAAGACATGA
AA sequence Show only first row Show all	>Lus10003041 pacid=23154544 polypeptide=Lus10003041 locus=Lus10003041.g ID=Lus10003041.BGIv1.0 annot-version=v1.0 MVGDGSSQLSVGRNMIAAAGAGAATAISTNPLWVVKTRLQTQGMRPGVVPYTSIFSALRRITREEGLRGLYSGILPSLVGISHVAIQFPAYEKIKSYMAD RDNTTVDELSPGEVAIASSVAKVVASITTYPHEVIRSRLQEQGQVRGSQVRYNGVVDCVRKVFLKEGVPGFYRGCATNLMRTTPSAVITFTSYEMIHRVL ERLVSGSIHSLNGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	0	1
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027858 [exp]	1.0	0.9484
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	1.4	0.9430
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	3.5	0.9203
AT3G04310			unknown protein		Lus10004401 [exp]	4.2	0.9046
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	4.2	0.9113
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	5.5	0.9274
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	7.2	0.9008
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	8.7	0.9193
AT3G06180			Ribosomal protein L34e superfa...		Lus10004432 [exp]	8.9	0.9041
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	12.0	0.9019

Compare expression of checked genes

Lus10003041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.