Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68430 62 / 7e-13 unknown protein AT5G16200 50 / 3e-08 50S ribosomal protein-related (.1) AT1G66890 40 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034103 [exp] 222 / 3e-75 AT1G68430 68 / 6e-15 unknown protein Lus10028496 [exp] 55 / 8e-10 AT5G16200 84 / 9e-21 50S ribosomal protein-related (.1) Lus10009148 [exp] 39 / 0.0005 AT5G16200 81 / 2e-19 50S ribosomal protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121300 [exp] 124 / 8e-37 AT1G68430 79 / 5e-19 unknown protein Potri.017G117866 [exp] 87 / 3e-22 AT5G16200 72 / 1e-16 50S ribosomal protein-related (.1) Potri.004G097200 [exp] 78 / 1e-18 AT1G66890 / unknown protein Potri.008G123800 [exp] 61 / 1e-12 AT1G68430 54 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003042 pacid=23154531 polypeptide=Lus10003042 locus=Lus10003042.g ID=Lus10003042.BGIv1.0 annot-version=v1.0 ATGGCGACGCTTCAGAAGTTCAAACTCCTCGCCACACAATGCGGAGTAGCTCCCAGCCCGACTCGGAGCCCCATGACCAGCCCAGTGGTCCAATTCCCCC GCCGTAAATCAACCCTCCGCATGCTACTCACCAGGAGCTCCGGCCGCCGTTGGAGTAGCAGGGACCACCTCCCTGCACCTGCTCCTCCTCCACAACCGAG ACCCGAGGAGCGGAGCAAGCGAGGCACCCTCAAGGACCTCTTCATTTCGTCGCCTGCTGCTACTTTTCAGGAAGAGGAAGATGAACCGGCGGCGGAGGCA GAGCAGAGTTCGAGTTGGATGACTGAGAAATGTCAAGTGTGGAGAATGAAGAAGGAGGTCGGAGGGCCATCGGTGCCGGGATGGATTGGGTTCAGGCACC GGGCCATTTTGCGTAGGTCTTGGCGCCCTGTTCTCGTCGGTATTCCTGAGAATGACCATTCCGGTGACTCTGAAACTGATTAG
AA sequence Show only first row Show all	>Lus10003042 pacid=23154531 polypeptide=Lus10003042 locus=Lus10003042.g ID=Lus10003042.BGIv1.0 annot-version=v1.0 MATLQKFKLLATQCGVAPSPTRSPMTSPVVQFPRRKSTLRMLLTRSSGRRWSSRDHLPAPAPPPQPRPEERSKRGTLKDLFISSPAATFQEEEDEPAAEA EQSSSWMTEKCQVWRMKKEVGGPSVPGWIGFRHRAILRRSWRPVLVGIPENDHSGDSETD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68430			unknown protein		Lus10003042 [exp]	0	1
AT1G68430			unknown protein		Lus10034103 [exp]	1.0	0.9657
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	1.7	0.9297
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	2.0	0.9418
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	2.8	0.9280
AT1G11915			unknown protein		Lus10038443 [exp]	3.0	0.8976
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	3.2	0.9252
AT1G69160			unknown protein		Lus10036813 [exp]	3.6	0.8848
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	3.7	0.9161
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	5.5	0.9207
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	6.9	0.9131

Compare expression of checked genes

Lus10003042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.