Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02360 897 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT5G41670 763 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 761 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT4G29120 49 / 6e-06 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 47 / 1e-05 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 42 / 0.001 GR2, GLYR2 glyoxylate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034102 [exp] 997 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10024725 [exp] 756 / 0 AT5G41670 896 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10032341 [exp] 754 / 0 AT5G41670 893 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10029098 [exp] 79 / 8e-18 AT3G02360 85 / 2e-20 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10012301 [exp] 52 / 5e-07 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10001349 [exp] 50 / 3e-06 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G108920 [exp] 907 / 0 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.017G106900 [exp] 907 / 0 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108880 [exp] 892 / 0 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.008G113700 [exp] 884 / 0 AT3G02360 874 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.001G095800 [exp] 750 / 0 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.003G135600 [exp] 748 / 0 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.014G197900 [exp] 54 / 7e-08 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G211500 [exp] 44 / 0.0002 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 42 / 0.001 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00393 [flax] [poplar] 6PGD 6-phosphogluconate dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003043 pacid=23154538 polypeptide=Lus10003043 locus=Lus10003043.g ID=Lus10003043.BGIv1.0 annot-version=v1.0 ATGGCTGCGAAACCAAGAATCGGACTTGCTGGTTTGGCTGTTATGGGTCAGAACCTCGCTCTCAACATCGCAGAGAAAGGATTCCCCATTTCCGTCTACA ATCGGTCTACCTCCAAGGTTGATGAGACTGTCGAGAGAGCAAAGAGAGAGGGTGATCTCCCAGTTCTTGGATTCCATGATCCTGAATCTTTCGTCCAGTC GATCCAGAAGCCTCGTGTGATAATCATGCTAGTTAAGGCCGGGGCTCCCGTCGATGCCACCATCCAGACTCTTTCTGCCTACATGGAGAAAGGTGACTGC ATTATCGACGGTGGGAACGAGTGGTATGAAAACACTGAGAGGAGGCAAAAGGCGATGCTAGAGAAGGGTTTACTATATCTCGGAATGGGAGTTTCGGGTG GCGAGGAAGGTGCACGAAACGGTCCCTCGATGATGCCTGGAGGATCCCTGGAGGTGTACAAGTACATTGAAGACATTCTTCTGAAAGTGGCAGCTCAAGT TCCCGACAGTGGCCCGTGTGTAACATACATCGGAGAAGGTGGATCCGGTAACTTTGTTAAGATGGTCCACAATGGAATCGAATACGGTGATATGCAGCTG ATTGCCGAAGCTTATGATGTGCTGAAGTCGGTGGGAAAGCTTTCCAACGAGGAGTTGCATAACGTTTTTACGGAATGGAACAAGGGCGAGCTACTGAGCT TCCTAATTGAAATAACTGCTGATATTTTTGGAATTAAAGATGATAAGGGAGAGGGATATTTGGTTGATAAGGTCCTGGACAAAACCGGTATGAAGGGTAC TGGTAAATGGACGGTGCAGCAAGCTGCAGATCTTTCTGTGGCAGCTCCCACAATTGCTGCTTCGTTGGATGCCAGGTTTCTTAGTGGTCTGAAGGAGGAA AGGGTTCAAGCTGCCGAGGTGTTCAAGTCTGGTGGTTTCTCGGATATTCTCACTGACCAAGTTGTGGACAAGGAGACGTTGATTGATGATGTGAGGAAAG CACTTTATGCATCCAAGATTTGCAGTTATGCACAGGGAATGAACATGATTCGCGCCAAGAGTATCGAGAAAGGATGGGGATTGGTGTTGGGAGAGTTGGC TAGGATTTGGAAAGGAGGCTGCATTATCAGAGCAGTGTTCCTGGACAGGATCAAGCAGGCCTATGACCGTAACCCTGAACTGTCTAACCTTCTCGTGGAT CCCGAGTTTGCAAAGGAAATCATCGAGCGCCAGTCTGCATGGCGCAGGGTTGTGTCTCTTGCGGTCAACTCCGGTATTAGTACTCCCGGTATGTCGTCCA GCCTTGCCTATTTCGACACCTACAGGAGAGGAAGGTTGCCTGCTAATCTTGTGCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAAAGAACTGA TATGGAAGGAGCTTTCCATACCGAGTGGTTCAAGATTGCTCGGCAATCAAAGTACTAG
AA sequence Show only first row Show all	>Lus10003043 pacid=23154538 polypeptide=Lus10003043 locus=Lus10003043.g ID=Lus10003043.BGIv1.0 annot-version=v1.0 MAAKPRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETVERAKREGDLPVLGFHDPESFVQSIQKPRVIIMLVKAGAPVDATIQTLSAYMEKGDC IIDGGNEWYENTERRQKAMLEKGLLYLGMGVSGGEEGARNGPSMMPGGSLEVYKYIEDILLKVAAQVPDSGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL IAEAYDVLKSVGKLSNEELHNVFTEWNKGELLSFLIEITADIFGIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAASLDARFLSGLKEE RVQAAEVFKSGGFSDILTDQVVDKETLIDDVRKALYASKICSYAQGMNMIRAKSIEKGWGLVLGELARIWKGGCIIRAVFLDRIKQAYDRNPELSNLLVD PEFAKEIIERQSAWRRVVSLAVNSGISTPGMSSSLAYFDTYRRGRLPANLVQAQRDYFGAHTYERTDMEGAFHTEWFKIARQSKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	1.7	0.9243
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	2.0	0.9407
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	2.8	0.9254
AT1G76140			Prolyl oligopeptidase family p...		Lus10021235 [exp]	4.7	0.9040
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	4.9	0.9194
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	5.7	0.9120
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	5.9	0.9169
AT5G10530			Concanavalin A-like lectin pro...		Lus10016833 [exp]	5.9	0.8552
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	5.9	0.9144
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	6.5	0.9146

Compare expression of checked genes

Lus10003043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.