Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034101 [exp] 152 / 4e-48 AT5G38790 57 / 7e-11 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003044 pacid=23154534 polypeptide=Lus10003044 locus=Lus10003044.g ID=Lus10003044.BGIv1.0 annot-version=v1.0 ATGGATCCATACAAACAATATGGATATTCAGAAGGATGCAGCAGCAGTGAATCAGGATGGACTACTTACATAGCTTCTCCCATGGAGGAAGATGGGAGTG ATGAACATGTTGATGCTGCGGCATATGCCAATGGTGGATACTGCAGTGGCAATTACAGGGACATCATTGCTGCAAATGTCGGCGAAGCAGACAGCGACGA TTCAATGGCCTCAGATGCATCGTCCGGACCATGGTACCATCAATCCAACGGCCAGAATGTTCGTAATCAGGGTAACTTGAAGCAGCAGCATCATGAAAAG GGCAGGAAGAGCATCAGCAGCAGCTTCAGCCAATTCCTGTCTGGGATAAAATCCAACAGCAGCAAGGACAAGAAGAAGAGTGAAGCTGACAGGAAGCTAC CTGCAGGTGGTAGCAGAAAACGTTGGAAATAG
AA sequence Show only first row Show all	>Lus10003044 pacid=23154534 polypeptide=Lus10003044 locus=Lus10003044.g ID=Lus10003044.BGIv1.0 annot-version=v1.0 MDPYKQYGYSEGCSSSESGWTTYIASPMEEDGSDEHVDAAAYANGGYCSGNYRDIIAANVGEADSDDSMASDASSGPWYHQSNGQNVRNQGNLKQQHHEK GRKSISSSFSQFLSGIKSNSSKDKKKSEADRKLPAGGSRKRWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38790			unknown protein		Lus10003044 [exp]	0	1
AT1G71970			unknown protein		Lus10017920 [exp]	3.2	0.7960
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	3.7	0.8172
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	4.1	0.8294
					Lus10040471 [exp]	6.6	0.7366
AT3G11590			unknown protein		Lus10005200 [exp]	8.5	0.7403
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10023482 [exp]	15.4	0.7745
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10012034 [exp]	15.7	0.8055
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	19.1	0.8084
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	19.9	0.7833
AT5G38700			unknown protein		Lus10025041 [exp]	20.2	0.7313

Compare expression of checked genes

Lus10003044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.