Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02350 791 / 0 GAUT9 galacturonosyltransferase 9 (.1) AT3G25140 693 / 0 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G61130 431 / 8e-144 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 427 / 4e-143 GAUT4 galacturonosyltransferase 4 (.1) AT4G38270 419 / 2e-139 GAUT3 galacturonosyltransferase 3 (.1.2) AT1G18580 383 / 3e-127 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 358 / 2e-117 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G46480 336 / 4e-109 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 313 / 6e-100 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G54690 312 / 1e-99 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011834 [exp] 684 / 0 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10022766 [exp] 453 / 4e-158 AT3G25140 568 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009311 [exp] 431 / 3e-144 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 429 / 1e-143 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 427 / 2e-141 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 424 / 3e-141 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 425 / 4e-137 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 406 / 1e-125 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018554 [exp] 370 / 7e-122 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106800 [exp] 839 / 0 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.004G111000 [exp] 839 / 0 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.002G246500 [exp] 709 / 0 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G010000 [exp] 572 / 0 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G151400 [exp] 434 / 6e-145 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 429 / 4e-143 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 423 / 1e-140 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 414 / 8e-138 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 410 / 9e-137 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.019G108900 [exp] 366 / 2e-120 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10003045 pacid=23154517 polypeptide=Lus10003045 locus=Lus10003045.g ID=Lus10003045.BGIv1.0 annot-version=v1.0 ATGGCGGTCACCGCTCGTGGTGGCCGAGGAAGTGGCATCGGATCCGGCGGTGTCAATGCCGGCCTCCGCAGCTTCTTCTCCTACCGGATCTTCCTCTCTG CCATGTTCACTCTCCTCTTCGTCGCCACCCTCTCTGCCATACTCACCACTCATCCTTCTACCTCTTCTCAGCTCCCCTCTTCATTTCATACAAGCGGAAA CGCATATATGCACCGGACATTTCTGGCAATTAAGTCGGATCCACTCAAAACCCGGTTAGATTTGATATACAAGCAAGCCACTGATCACATGATGCTCGTG AACGCTTACGCTGCTTACGCGAGGAAGCTGAAGCTTGACATTTCCAAGCAGCTGAACATGTTTGATGACCTTGCAAAGAATTTCTCCGATCTAACCTCAA AACCGAGTTACTCGTTCGAAGGGCAGAGTGCAGTGGACGATGAGGTATTGAGACAGTTTGAGAAGGAGGTTAAGGAGAAGGTGAAAGTTGCGCGGTCCAT GATAGTTGAGTCCAAGGAAAGTTACGACAATGAGATCAAGATTCAGAAGCTCAAAGATACGATATTTGCTGTGAATGAGCAGTTGGGGAAGGCAAAGAAG AATGGGGGTATAACCAGCAACATTGCTGCGAAATCTATCCCGAAGAGTCTGCATTGCTTGGCGATGAGGCTTGTAGAGGAGAGGATCACGCACCCGGAGA AGTACACTGAAGAAGAGCCCAACCCTGCTTTTGAAGATCCGAGTTTGTATCACTATGCTTTGTTTTCAGACAATGTGATTGCTGTTTCTGTTGTGGTGAG GTCGGTGGTGAACAACACAGAGGAACCTTGGAAGCACGTCTTTCATGTGGTTACTGATAGGATGAATCTAGCAGCTATGAAGGTTTGGTTTAGGATGAGA CCGATCGAAGGGGGTGCACATGTGGAGATCAAGTCTGTGGAAGACTTCTCGTTCTTGAATCCGTCCTATGTCCCAGTTTTGAAGCAACTCGAAAGCTCTT ATATGAAAAATCATTACCACAAGATTCAAGCAGAGAATGCTAGTGGTGATGCCGCAAGTAATATGAAATTCAGGAACCCAAAGTACATGTCAATGTTGAA TCATCTCCGGTTTTATTTGCCAGAGTTGTATCCCAAGTTGCATAAGATATTGTTTCTGGACGATGACGTAGTTGTCCAGAAGGACTTGAGCAGGTTGTGG AAGCTTGATTTGGATGGGAAGGTGAATGGAGCTGTCGAGACTTGCTTCGGGTCGTTTCACCGTTACTCCCATTACTTGAACTTTTCACATCCCCTGATCA AGGAGAACTTTAATTCCAAGGCTTGTGCTTGGGCTTTTGGAATGAACATATTCGATCTAGATGCTTGGAGGCGTGAGGGTTGCACTGAAACTTATCACCA CTGGCAGAACTTGAATGAGAATCACACTCTATGGAAATCGGGCACTCTCCCAGCTGGATTGATCACATTCTACTCGAAAACCAAGTCGTTGGACAAAGCA TGGCATGTGCTCGGCCTTGGTTACAATCCCGGTATCAGCATGGACGAGATCAGCAATGCTGCAGTGATTCATTACAACGGGAACATGAAACCTTGGCTCG ACATTGCCATGAACCAGTACAAGCATCTATGGACGAAACATATCGACAGCGACATGGAGTTTGTTCAGATGTGCAATTTTGGCCTGTAG
AA sequence Show only first row Show all	>Lus10003045 pacid=23154517 polypeptide=Lus10003045 locus=Lus10003045.g ID=Lus10003045.BGIv1.0 annot-version=v1.0 MAVTARGGRGSGIGSGGVNAGLRSFFSYRIFLSAMFTLLFVATLSAILTTHPSTSSQLPSSFHTSGNAYMHRTFLAIKSDPLKTRLDLIYKQATDHMMLV NAYAAYARKLKLDISKQLNMFDDLAKNFSDLTSKPSYSFEGQSAVDDEVLRQFEKEVKEKVKVARSMIVESKESYDNEIKIQKLKDTIFAVNEQLGKAKK NGGITSNIAAKSIPKSLHCLAMRLVEERITHPEKYTEEEPNPAFEDPSLYHYALFSDNVIAVSVVVRSVVNNTEEPWKHVFHVVTDRMNLAAMKVWFRMR PIEGGAHVEIKSVEDFSFLNPSYVPVLKQLESSYMKNHYHKIQAENASGDAASNMKFRNPKYMSMLNHLRFYLPELYPKLHKILFLDDDVVVQKDLSRLW KLDLDGKVNGAVETCFGSFHRYSHYLNFSHPLIKENFNSKACAWAFGMNIFDLDAWRREGCTETYHHWQNLNENHTLWKSGTLPAGLITFYSKTKSLDKA WHVLGLGYNPGISMDEISNAAVIHYNGNMKPWLDIAMNQYKHLWTKHIDSDMEFVQMCNFGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	0	1
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	2.8	0.8940
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	3.7	0.8980
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	4.6	0.8904
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	5.3	0.8885
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10008433 [exp]	5.8	0.8239
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10038911 [exp]	6.2	0.8471
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	7.1	0.8356
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	7.3	0.8742
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	7.7	0.8742
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	8.8	0.8729

Compare expression of checked genes

Lus10003045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.