Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02460 579 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 575 / 0 PAM1 plant adhesion molecule 1 (.1) AT3G07890 134 / 1e-35 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 124 / 6e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 100 / 6e-23 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 92 / 4e-20 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 89 / 2e-19 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT1G04830 66 / 2e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G13730 62 / 2e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT5G52580 58 / 5e-09 RabGAP/TBC domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034099 [exp] 721 / 0 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 142 / 7e-39 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 142 / 9e-39 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10014020 [exp] 109 / 8e-26 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10040349 [exp] 100 / 5e-23 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10041425 [exp] 99 / 2e-22 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 99 / 3e-22 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 80 / 3e-16 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 77 / 2e-15 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106700 [exp] 612 / 0 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 587 / 0 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.014G163400 [exp] 141 / 2e-38 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 141 / 2e-38 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G133400 [exp] 129 / 1e-32 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.008G046600 [exp] 110 / 2e-26 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.010G215000 [exp] 106 / 5e-25 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G134200 [exp] 79 / 6e-16 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G316700 [exp] 71 / 3e-13 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 67 / 4e-12 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10003047 pacid=23154524 polypeptide=Lus10003047 locus=Lus10003047.g ID=Lus10003047.BGIv1.0 annot-version=v1.0 ATGGAAAAGAAAAGAGCAGATGACCATGAGGCAGGGCCAAATCCTTCACCCCGATTCACTGATAGATTTAGCTGTCTAAAGCAAGATGCTTGCCATTCTC CTGAAGGTTCGAGCAAAGCGAGTGAAGAAAGGAGGATCAGGAAATGGAGGAAGATGATTGGGGTCGGAGGAAGTGACTGGAAACACTACGTGAGGAGGAA GCCTCATGTGGTTAAAAGGCGTATTAGGAAAGGAATTCCTGACTGTTTAAGGGGTGTTGTTTGGCAGCTTATTTCTGGAAGTAGAGATCTTCTGCTGATG AATCCTGGGGTGTATGAGCAACTAGTTATATATGAGACGTCAGCATCTGAACTGGACATAATTCGTGATATATCTCGCACTTTTCCTTCACACGTCTTCT TCCAGCAGAGACATGGTCCAGGCCAGAGGTCTCTTTACAATGTATTGAAGGCATATTCTGTGTATGATAGAGATGTGGGATATGTCCAGGGAATGGGCTT TGTAGCTGGTTTGTTGCTTCTTTATATGAGTGAAGAAGATGCCTTCTGGTTGTTGGTTGCGTTGCTCAAAGGTGCTGTCCATGCTCCGATGGAAGGGTTG TATCAGGTGGGGCTGCCTCTTGTACAGCAGTATCTGTTTCAGTTTGAGAATTTGGTGAAAGAACATATGCCCAAACTTGGACAGCATTTTTCAACGGAAA TGATAAATCCTAGCATGTATGCTAGTCAGTGGTTTATTACTGTCTTCTCATACTCATTCCCATTTCACTTGGCCCTTCGAATTTGGGATGTCTTTCTTTA CGAGGGTGTAAAAATTGTTTTCAAAGTAGGATTGGCTCTGTTGAAATATTGCCATGACGACATGGTCAAACTTCCATTTGAGAAGCTAATGCAAGCTTTC CGTAACTTCCCTGAGGATGCCATGAATCCAGATGTTTTGCTACCAATGGCGTACTCCATAAAGGTATCGGGTCGATTGAAAGAGCTGAAGCACGAGTATG ACAAGAACAATGCGAAGGTGCTTCAGTCGTCAGAGCATGAAAATGGGAACAAAGAAGCTGATGCAATGAAGTAA
AA sequence Show only first row Show all	>Lus10003047 pacid=23154524 polypeptide=Lus10003047 locus=Lus10003047.g ID=Lus10003047.BGIv1.0 annot-version=v1.0 MEKKRADDHEAGPNPSPRFTDRFSCLKQDACHSPEGSSKASEERRIRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGVVWQLISGSRDLLLM NPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFVAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGL YQVGLPLVQQYLFQFENLVKEHMPKLGQHFSTEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDMVKLPFEKLMQAF RNFPEDAMNPDVLLPMAYSIKVSGRLKELKHEYDKNNAKVLQSSEHENGNKEADAMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	0	1
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	1.0	0.8861
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	3.5	0.8737
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	4.5	0.8733
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	5.8	0.8769
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	6.9	0.8164
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	9.4	0.8589
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	10.4	0.8617
AT1G31940			unknown protein		Lus10012117 [exp]	11.4	0.8730
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	13.0	0.8490
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	13.4	0.8563

Compare expression of checked genes

Lus10003047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.