Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 361 / 2e-126 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 355 / 8e-124 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 338 / 3e-117 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G30270 337 / 4e-117 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT4G25810 333 / 2e-115 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 333 / 4e-115 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57540 322 / 4e-111 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G57530 320 / 4e-110 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT4G25820 319 / 1e-109 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT2G18800 299 / 1e-101 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034098 [exp] 507 / 0 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 495 / 4e-179 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 491 / 1e-177 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 489 / 1e-176 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 487 / 5e-176 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 486 / 1e-175 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 409 / 3e-145 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 407 / 3e-144 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 406 / 5e-144 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201250 [exp] 411 / 8e-146 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 408 / 9e-145 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 400 / 8e-142 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 382 / 1e-134 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G236200 [exp] 368 / 4e-129 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.014G146100 [exp] 367 / 1e-128 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 353 / 4e-123 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 345 / 8e-120 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 342 / 1e-118 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 339 / 5e-117 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10003048 pacid=23154515 polypeptide=Lus10003048 locus=Lus10003048.g ID=Lus10003048.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTCTGCCTCTGGTGATGTTACTAGTGACGGTGTTGGGTACTCATCTAGTGCCAATCTCGAATGCCAACTTCCACCAGCATTTTGACGTCA CTTGGGGGCACCACCATGCTCAGATCACCAACGGCGGACAGCAATTAGCCCTCTCCCTCAACAAGGATTCCGGCGCTGGCTTCAAATCCAAGAACGAGTA TCTCTTTGGTCGCATCGATATGCAACTCAAGCTCATCGCTGGCAACTCTGCTGGAAGTGTCACGACTTTTTACCTGTCGTCGAAAGAAGGACCGAATCAC GATGAAATCGACTTCGAGTTTCTCGGAAACTCCACCGGTAATCCTTACACGCTCCACACCAATGTTTTTAGTCAAGGAAAAGGCAACAGAGAACAACAGT TCCATCTCTGGTTCGACCCGACTGCTGCTTTCCACACCTACACCATCCTTTGGAATTCCCAAAGAATCATATTCTTGGTGGACAACATACCAATCAGAGT GTTCAACAACTTGGAATCAATGGGGGTTCCATTCCCGAACAAGAAGCCGATGAGCATCCACTCCAGCTTGTGGAATGCTGATGATTGGGCTACCCAAGGC GGAAGAGTCAAGGCTGATTGGACCAACGCTCCATTCGTCGCGTCTTACAGAAACTTCAAGGCCGAAGCCTGCGTCTGGTCACCGTCCTCGGCCTCCTCAA CCTGCTCTCCGGGAGGATGGCAGACTCAGGGGATTGATGCCGCCGGCCGGAACAGGATCCGATGGGTGCAGAGCAAATATATGATCTACAATTACTGCAC CGACTTGCAACGCTTCCCTCAGGGCGTCCCTGTTGAATGCAAGCAGTCCCGATTCCTTTGA
AA sequence Show only first row Show all	>Lus10003048 pacid=23154515 polypeptide=Lus10003048 locus=Lus10003048.g ID=Lus10003048.BGIv1.0 annot-version=v1.0 MAATLPLVMLLVTVLGTHLVPISNANFHQHFDVTWGHHHAQITNGGQQLALSLNKDSGAGFKSKNEYLFGRIDMQLKLIAGNSAGSVTTFYLSSKEGPNH DEIDFEFLGNSTGNPYTLHTNVFSQGKGNREQQFHLWFDPTAAFHTYTILWNSQRIIFLVDNIPIRVFNNLESMGVPFPNKKPMSIHSSLWNADDWATQG GRVKADWTNAPFVASYRNFKAEACVWSPSSASSTCSPGGWQTQGIDAAGRNRIRWVQSKYMIYNYCTDLQRFPQGVPVECKQSRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	0	1
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	1.0	0.9573
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	2.6	0.9065
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	3.7	0.9431
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	5.2	0.8982
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	5.3	0.9166
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	5.5	0.9164
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	7.1	0.9358
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	11.0	0.8932
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	12.4	0.8816
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10039524 [exp]	14.1	0.8743

Compare expression of checked genes

Lus10003048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.