Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19940 560 / 0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034096 [exp] 801 / 0 AT2G19940 567 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145700 [exp] 617 / 0 AT2G19940 618 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01118 [flax] [poplar] Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02774 [flax] [poplar] Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10003050 pacid=23154510 polypeptide=Lus10003050 locus=Lus10003050.g ID=Lus10003050.BGIv1.0 annot-version=v1.0 ATGAATGCTGCTACTTTCAGCTCTATTTCCTGTCATCAAGGATGCAGGTGGAAGGGAGAGGGGAGATTTTTGAAGCCCAACAACAATAATAGCGATGGCC AGCTCAAAGTGAAAAGACGATCGGCACCGAGGAGCTTGAATATATCATGCTCAAATGTGGAGAAAAAAGACGTCCGTGTTGCTATCCTGGGTGCTAGTGG ATATACCGGTGCTGAGATAATCCGACTGGTCCAAAATCATCCCTTTGTTGGGATCTCTCTTATGACTGCTGACAGGAATGCTGGCAAATCAATTGGATCG GTGTTTCCTCACTTGGCCACTCTAAAGGACTTGCCAACTTTGATATCCACTAGCGAGGCCGATTTTTCAGATGTGGATGCTGTGTTTTGTTGTTTACCTC ATGGGACGACACAGGAAATAATCAAAGGGCTTCCACAAGGTTTAAAAATTGTTGATCTCTCTGCTGACTTTCGACTCCGAAAACTCTCGGATTATGAACA ATGGTATGGCCAACCACATAGAGCACCTGAATTACAGGAAGAAGCCGTGTACGGTTTGACTGAAATTTCCAGAGATGAAATAAAAGCTGCACGATTGGTT GCTAATCCAGGGTGTTATCCCACATCAATTCAACTTCCTCTTGTACCTTTGATCAAGGCTGAACTAATCCGCCATGAGAATATCATCATTGACTCAAAAT CTGGAGTTAGTGGAGCAGGACGTAGTGCAAAAGTGAATAACCTATACGCAGAAGTATCCGAGGGCATAATGTCTTATGGTGTTACAGGACATCGACATGT TCCGGAAATTGAACAGGGACTGTCTGATGCTGCTGGGGGTGAAGTAACAGTCAGTTTCACCCCACACTTAATGCCTATGAGTCGCGGGATGCAATCAACT ATATATGTGGAGATGGCTCCAGGGAAGACTGTTGACGACTTATACGAGCAATTGAAACGGTCTTATGAGGAGGAAGAATTTGTACATGTTTTAGAGAAAG GAGTGATTCCTCGGACTCACGATGTTCAGGGATCAAACTATTGTTATATGAATGTCTTTCCTGATCGAGGTTCCAACAGAGCAAAAATTATATCAGTTAT TGACAACTTGGTGAAAGGTGCATCTGGGCAAGCTATACAAAATCTGAACTTGATGATGGGGTTTCCAGAAAATGCTGGACTTGGCTATGTGCCATTGTTT CCTTAA
AA sequence Show only first row Show all	>Lus10003050 pacid=23154510 polypeptide=Lus10003050 locus=Lus10003050.g ID=Lus10003050.BGIv1.0 annot-version=v1.0 MNAATFSSISCHQGCRWKGEGRFLKPNNNNSDGQLKVKRRSAPRSLNISCSNVEKKDVRVAILGASGYTGAEIIRLVQNHPFVGISLMTADRNAGKSIGS VFPHLATLKDLPTLISTSEADFSDVDAVFCCLPHGTTQEIIKGLPQGLKIVDLSADFRLRKLSDYEQWYGQPHRAPELQEEAVYGLTEISRDEIKAARLV ANPGCYPTSIQLPLVPLIKAELIRHENIIIDSKSGVSGAGRSAKVNNLYAEVSEGIMSYGVTGHRHVPEIEQGLSDAAGGEVTVSFTPHLMPMSRGMQST IYVEMAPGKTVDDLYEQLKRSYEEEEFVHVLEKGVIPRTHDVQGSNYCYMNVFPDRGSNRAKIISVIDNLVKGASGQAIQNLNLMMGFPENAGLGYVPLF P

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19940			oxidoreductases, acting on the...		Lus10003050 [exp]	0	1
AT2G37500			arginine biosynthesis protein ...		Lus10003981 [exp]	2.4	0.9490
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10014463 [exp]	3.5	0.9523
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	9.9	0.9552
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	17.0	0.9527
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	18.1	0.9516
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	18.5	0.9425
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	23.7	0.9396
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	24.2	0.9499
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	26.9	0.9485
					Lus10040444 [exp]	27.9	0.9481

Compare expression of checked genes

Lus10003050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.