Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38710 481 / 5e-167 Methylenetetrahydrofolate reductase family protein (.1) AT3G30775 469 / 5e-162 PDH1, PRODH, PRO1, AT-POX, ATPOX, ATPDH, ERD5 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034094 [exp] 867 / 0 AT5G38710 494 / 4e-172 Methylenetetrahydrofolate reductase family protein (.1) Lus10034095 [exp] 723 / 0 AT5G38710 460 / 2e-160 Methylenetetrahydrofolate reductase family protein (.1) Lus10005114 [exp] 648 / 0 AT3G30775 494 / 4e-172 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1) Lus10003053 [exp] 507 / 6e-179 AT5G38710 311 / 1e-102 Methylenetetrahydrofolate reductase family protein (.1) Lus10003052 [exp] 87 / 3e-21 AT5G38710 63 / 1e-13 Methylenetetrahydrofolate reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109300 [exp] 542 / 0 AT5G38710 501 / 3e-175 Methylenetetrahydrofolate reductase family protein (.1) Potri.004G106400 [exp] 536 / 0 AT5G38710 532 / 0.0 Methylenetetrahydrofolate reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0086 [flax] [poplar] FAD_oxidored PF01619 [flax] [poplar] Pro_dh Proline dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003051 pacid=23154526 polypeptide=Lus10003051 locus=Lus10003051.g ID=Lus10003051.BGIv1.0 annot-version=v1.0 ATGGCCACCACTGCCAAAACCGCCACCAAATTCCTCCTCCGTCACAGCGCCGTTGTCAGGCACCTCAACTCCTCCCCTTCATCTTTCTCCGCCGCCGCCC CACCTCTCAGCTTGACCACCCACGTCGACGTGGACATCCCGGCCACAACCTTCGGCAGTACTACCACCCCACCTCCTCCGGCGTCGCCAACCTCCATCCT ACAGCTGGACGATCACCGGGAACTGTACGGCGCCGTGCCCCTTCAGAAGCTGATCCACGCCTCCGCCGTCCTCCACGCGTCGGCGTCGGAGGTGGTGGTG GACGTCGGTTCGAAGGTGCTGACGTCGCGCCTCATGGAGGTGGAAGCCGTGCGGGGGCTGGTGTACGGGGTTGTGAGGCGGACGTTCTACGAGCATTTCT GCGGCGGGGAGACTTCTGCGGAGGCGCGTGAGAAGGTTAGGGAGCTGAACGAGTCCGGGCTACGCGCCATGCTGGATTTTGCCGTGGAGTACACCCCTGA CAACGAGGCTTGTGATCGGAATTTGGAAGGGTTCCTCGAGACGGTGGATTCCGCTGCCTCTCTTCCAGCATCTTCGGTGAGTTTCGTACCAATCAAGATG ACGGCCATTTGCCCACTGACACTGCTTGAGCGGATCAGCGACTTACTCCGGTGGCAACAACGGCAGCCGTCAAATTTCCACCTGCCATGGAAACAATCTT CAAATTCCTCGTTGCCAATTTTCTCAGAATCAAGCCCATTGTACCACACTCTAACCCAACCAGCTCAACTCACAGAAGAAGAAGAACAAGACCTCCAACT AGCCCACAAAAGACTCGACATTCTCTGCCAAAGATGCTCGGAATCGAACATACCTCTCACCATCGATGCAGAGGACACCAAGCTCCAACCGGCCATCGAT TACTTCACCTACACGGCAGCCGCTGTTTACAACACAAAGGACACACCTTTGGTGTACAACACCATCCAGGCTTACTTGAAGGATGCCAAGGATAGGCTAC TCATGGCTACAAAGGCTGCAGACAAGATGGGTTTGGCTATGGGGTTCAAGCTTGTCAGAGGCGCCTATATGTCGAGCGAGAGACTGCTGGCTTCGAAACT CGGATTCGAGTCTCCCGTCCATGACACGATTCAGGACACTCACGATTGTTACAACGATTGCGCGAGGTTTATGATCGATCGGATTGGTAATTCTGGCTTG GGAACGAACGATGGGTTGGTTCTGGCGACGCATAATGTAGAATCGGCCAGGCTGGCGGCTACCAGGGCCAGAGAGATGGGGATAATGGGAATGGAGGAGA AGAGGCTGGAGTTTGCACAGCTTTACGGGATGGGGGAATCGCTTTCGATGGGGCTGAAGAATGCCGGGTTTCGAGTTAGTAAATACATGCCGTTTGGAGA GATTGATATAGTGATGCCTTATTTGGTTAGGAGGGCTGAAGAGAACAGAGGAATGCTCTCTGCTTCGAGCCTTGACAGAGACCTCATCAGAAAGGAGCTG AAGAGAAGGGTGAAAGCTGGAATCTTGGGCAATTAA
AA sequence Show only first row Show all	>Lus10003051 pacid=23154526 polypeptide=Lus10003051 locus=Lus10003051.g ID=Lus10003051.BGIv1.0 annot-version=v1.0 MATTAKTATKFLLRHSAVVRHLNSSPSSFSAAAPPLSLTTHVDVDIPATTFGSTTTPPPPASPTSILQLDDHRELYGAVPLQKLIHASAVLHASASEVVV DVGSKVLTSRLMEVEAVRGLVYGVVRRTFYEHFCGGETSAEAREKVRELNESGLRAMLDFAVEYTPDNEACDRNLEGFLETVDSAASLPASSVSFVPIKM TAICPLTLLERISDLLRWQQRQPSNFHLPWKQSSNSSLPIFSESSPLYHTLTQPAQLTEEEEQDLQLAHKRLDILCQRCSESNIPLTIDAEDTKLQPAID YFTYTAAAVYNTKDTPLVYNTIQAYLKDAKDRLLMATKAADKMGLAMGFKLVRGAYMSSERLLASKLGFESPVHDTIQDTHDCYNDCARFMIDRIGNSGL GTNDGLVLATHNVESARLAATRAREMGIMGMEEKRLEFAQLYGMGESLSMGLKNAGFRVSKYMPFGEIDIVMPYLVRRAEENRGMLSASSLDRDLIRKEL KRRVKAGILGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	0	1
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	2.8	0.9674
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	4.0	0.9657
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	4.5	0.9626
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028392 [exp]	5.0	0.9458
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	7.1	0.9655
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	7.6	0.9429
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	10.0	0.9532
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	11.0	0.9580
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	15.0	0.9544
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	16.1	0.9560

Compare expression of checked genes

Lus10003051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.