Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38710 288 / 2e-93 Methylenetetrahydrofolate reductase family protein (.1) AT3G30775 283 / 3e-91 PDH1, PRODH, PRO1, AT-POX, ATPOX, ATPDH, ERD5 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034095 [exp] 498 / 7e-177 AT5G38710 460 / 2e-160 Methylenetetrahydrofolate reductase family protein (.1) Lus10003051 [exp] 499 / 8e-176 AT5G38710 497 / 2e-173 Methylenetetrahydrofolate reductase family protein (.1) Lus10034094 [exp] 494 / 1e-173 AT5G38710 494 / 4e-172 Methylenetetrahydrofolate reductase family protein (.1) Lus10005114 [exp] 387 / 5e-132 AT3G30775 494 / 4e-172 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109300 [exp] 328 / 6e-109 AT5G38710 501 / 3e-175 Methylenetetrahydrofolate reductase family protein (.1) Potri.004G106400 [exp] 328 / 6e-109 AT5G38710 532 / 0.0 Methylenetetrahydrofolate reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0086 [flax] [poplar] FAD_oxidored PF01619 [flax] [poplar] Pro_dh Proline dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003053 pacid=23154548 polypeptide=Lus10003053 locus=Lus10003053.g ID=Lus10003053.BGIv1.0 annot-version=v1.0 ATGGACGTGGAAGCGGTGAGAGGGCTTGTGTACTGGGTGGTGAGGCGGACGTTTTACGAGCATTTCTGCGGCGGGGAGACTGCGGTGGCGGCGCGTGAGA AGGTTAAGGAACTTAACGAGTCCGGGCTACGCGCTATGCTGGATTTCGCGGTGGAGTACACGCCCGACAACGAGGCTTGCGGTGGATTCCACGGCCTCTC TTCCACCTTTCTCAACGAAAGATTCTTCCACCTTTCGTGGAAGGAGATTCCGATTCCAAAGACGGAAGATACGGCATTAAAGAATCCCTTGCGTTATGCA AAATTTGATCATGTGGCTAATTTCCATCTTGACCAAGAAGTGAGTTTCGTGGCCGTGAAGATGACAGCCATTTGCCCACTCACACTACTCGAACGAATCA GCGACTTACTCCGTTGGCAACAAAGACTATCAGCGTCAACATCAACATCAAATTTCCACCTCCCATGGAAACAATCTTCAAATTCCTCATTGCCAATTTT CTCAGAATCAAGCCCGTTATACCACACTCAAACCCAACCACAACAACTCACAGAGGAGGAAGAACAAGACCTCCAACTAGCCCACAAAAGACTCAACACT CTCTGCCAAAGATGCTCGGAATCGAACATCCCTCTCACCATCGATGCAGAGGACACCAAGCTCCAACCGGCCATCGATTACTTCACCTACACTTCAGCCG TCATTTACAACACAAAGGACACACCTTTGGTGTACAACACCATCCAGGTTTACTTGAAGGACGCCAAGGATAGGCTACTCATGGCTACAAAGGCTACTGA TAAGATGGGGTTGGCTATGGGGTTCAAGCTTGTCAGAGGAGCTTACATGTCTAGCGAGAGAGTTTTGGCTTCGAAACTCGGATTCGGGTCTCCTGTCCAC GACACGATTCGGGACACTCACGAATGTTACAACGATTGCGCGAGGTTTATGATCGACCGGATTGGTAACTCGAATTCTTCGGATGGGTTGGTTCTGGCGA CGCATAATGTCGAATCGGGGAGGCTAGCGGCTAATAGAGCCAGAGAGGCTGGAGTTTGCACAGCTTTACGGGATGGGGGAATCGCTTTCGATGGGGCCGA AGAATGCCGGGTTTCGAGTTAG
AA sequence Show only first row Show all	>Lus10003053 pacid=23154548 polypeptide=Lus10003053 locus=Lus10003053.g ID=Lus10003053.BGIv1.0 annot-version=v1.0 MDVEAVRGLVYWVVRRTFYEHFCGGETAVAAREKVKELNESGLRAMLDFAVEYTPDNEACGGFHGLSSTFLNERFFHLSWKEIPIPKTEDTALKNPLRYA KFDHVANFHLDQEVSFVAVKMTAICPLTLLERISDLLRWQQRLSASTSTSNFHLPWKQSSNSSLPIFSESSPLYHTQTQPQQLTEEEEQDLQLAHKRLNT LCQRCSESNIPLTIDAEDTKLQPAIDYFTYTSAVIYNTKDTPLVYNTIQVYLKDAKDRLLMATKATDKMGLAMGFKLVRGAYMSSERVLASKLGFGSPVH DTIRDTHECYNDCARFMIDRIGNSNSSDGLVLATHNVESGRLAANRAREAGVCTALRDGGIAFDGAEECRVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003053 [exp]	0	1
AT3G48480			Cysteine proteinases superfami...		Lus10035097 [exp]	4.2	0.8804
AT4G10970			unknown protein		Lus10023075 [exp]	12.3	0.8954
AT5G38200			Class I glutamine amidotransfe...		Lus10039726 [exp]	14.4	0.8669
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	15.1	0.8789
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	24.5	0.8679
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	28.9	0.8804
					Lus10006087 [exp]	32.4	0.8777
AT3G53270			Small nuclear RNA activating c...		Lus10024665 [exp]	33.6	0.8699
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	35.4	0.8765
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039456 [exp]	41.2	0.8539

Compare expression of checked genes

Lus10003053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.