Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15880 284 / 3e-94 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034091 [exp] 502 / 5e-180 AT5G15880 378 / 4e-131 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G105400 [exp] 353 / 2e-121 AT5G15880 387 / 2e-134 unknown protein Potri.017G110300 [exp] 353 / 2e-121 AT5G15880 364 / 1e-125 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003057 pacid=23154511 polypeptide=Lus10003057 locus=Lus10003057.g ID=Lus10003057.BGIv1.0 annot-version=v1.0 ATGGCGGGACTACTAGCATGGGCGGCGGATGTGGTACGTGGCCACGGTGATGAATCCGATCACATTCCGATCCTCTTCACCGAAGAGCAGCACAAGTATG TTGGAGAACTGGATCGCAAGGCGGCTTCTCTCACCCGTACGATCCAAGATCTGCGCCAGAGATTGCCTCCTCCTGACATCTCCCAACGCCTCCCTCACCT TCTCGCCCACTCCCTCGCTTCCAACGCCGCTCTCGCTCTCCAGCTGAACGCTCACTCCGCCACCAAAGAGCAGACCCAGTTGCGTGAAGTGACCTTGCAG GAAGAAAATGCTGCGTACGAGAGAGCTATCTCAAATTGTGAAAATAAGATACAAGAGAAAATGCAGGAAGCGGATTTACTTCAAATGAAGCTGCAGGAAA TTGACGATACAGAGAACAATTTGAGAGAGCAAATGCAAAATTTAGAGGCTGACAAAGTTAGCGAGTCTGGAGAATCTAGTGAATTAATTCTATCGGATAA GGTGGTGACAGAAGGTCTAGATGCAGAAGCTGAAAACGTTTCCATACTTGAGAAGTTGGAGGCCAAGAAAAAAGAACTGAGTTCGATGGAAGAAATCGTT CTGGATTTAGAAAGAAAGTGGGCACAGATTCAGGATAAAGCATTAAAACAGCCTACACCAGCTCAGAGGGAGAAGACACTGGATAAACAACTTCACAGTT TAATCGAACAACTTGAAGGAAAACAGTCACAAGCAGAAAGCCTGGTGAGTGAAATCCATATAAAGGAGATGGAGCTGGAAAGGCTGAACGGGTTGTGGAA GCAGCTGGAGAGCAGCAGCAATGCCGAATCCAATGCTTCTAGGAACCGTTACGGAAGGAGCAGCTCGTTGAACATGTCCGGTTCTTTAGATTATATGTAC GACAAGCTTCCTCAGTCTACTGGTGGTCGGACCAAGCACGAGGAGCGGCTTGTGTTAATGAGATCGGCTTTCGTTATCTACATTCTATTCTTGCACATAA TAGTGTTCATCAAGCTTTCGTTTTGA
AA sequence Show only first row Show all	>Lus10003057 pacid=23154511 polypeptide=Lus10003057 locus=Lus10003057.g ID=Lus10003057.BGIv1.0 annot-version=v1.0 MAGLLAWAADVVRGHGDESDHIPILFTEEQHKYVGELDRKAASLTRTIQDLRQRLPPPDISQRLPHLLAHSLASNAALALQLNAHSATKEQTQLREVTLQ EENAAYERAISNCENKIQEKMQEADLLQMKLQEIDDTENNLREQMQNLEADKVSESGESSELILSDKVVTEGLDAEAENVSILEKLEAKKKELSSMEEIV LDLERKWAQIQDKALKQPTPAQREKTLDKQLHSLIEQLEGKQSQAESLVSEIHIKEMELERLNGLWKQLESSSNAESNASRNRYGRSSSLNMSGSLDYMY DKLPQSTGGRTKHEERLVLMRSAFVIYILFLHIIVFIKLSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15880			unknown protein		Lus10003057 [exp]	0	1
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10040622 [exp]	2.0	0.7508
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	9.1	0.7687
AT5G47540			Mo25 family protein (.1)		Lus10027342 [exp]	28.5	0.7101
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018721 [exp]	39.5	0.7004
AT5G47540			Mo25 family protein (.1)		Lus10010497 [exp]	57.5	0.6884
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	59.9	0.6463
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	70.8	0.6782
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	88.4	0.6628
AT1G56230			Protein of unknown function (D...		Lus10020675 [exp]	98.5	0.5770
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	109.6	0.6483

Compare expression of checked genes

Lus10003057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.