Plant FIBer expression Database

Lus10003058 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16020 484 / 1e-163 GEX3 gamete-expressed 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034090
[exp]
850 / 0 AT5G16020 358 / 1e-114 gamete-expressed 3 (.1)
Lus10017838
[exp]
389 / 7e-131 AT5G16020 201 / 3e-59 gamete-expressed 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G104500
[exp]
672 / 0 AT5G16020 518 / 2e-176 gamete-expressed 3 (.1)
PFAM info
Representative CDS sequence
>Lus10003058 pacid=23154529 polypeptide=Lus10003058 locus=Lus10003058.g ID=Lus10003058.BGIv1.0 annot-version=v1.0
ATGCCAGTCCAGTCGATCTTCGTATTCCTTGTGATGCTTTCATTTGCATCCGCACAATTCAATACTGATTTCCCAGGTCAGCCAAGAACTGCTACAAGAC
AACTTTCGAAGCCTCTGATCGGAGACGACGGAAGGATCTATGCATGTTCCGAAAGATTCTTGTACGCATTCCGAAGCAATGGGTCGATCCATTGGACCTT
ACATTTGGGTTCTGATTGCAATCTCAGCATGACCCCTGTCCATGGCGGACCAGGACTGGCAAGTGATAGAGTTTCCAAGATCAATTTCCAGCACATTGGG
ACATCTGTGCCTGCTGAGGAAGTCTTCTTTGGACAGGAGGGTGCAGGTGAGGTAGTTGGTATTGCAGTGAACACACTGAGTTCTTCGGTGTTCATCAATG
TCAAGAATCGAGGGCTGTTTGCATACAGCATCATCAATGGGAAACTACTGTGGAGTGCTGGCCCTATGCTTTTCCAGTATGGCTACCGTTTAGGTTGCAG
ACAAGGAGTTGAAAACTGTTATTTCGCTTCAGTCCCTGTGATTGATCAATGCGAAGCTAGCTTGTATATTTCAAATACGAAAGGAGAAGTTTATTCGTTG
TCTCTTCACGATCCGCGGTTCAACTGGGTCCAGGATCTGAGCTTCCTTGATGAAGCTTTCACCATTACTCCGGGCAACAATGGACGTTTGTATGTCACCA
TACCTGTCAAGGCAATTTTATTGGCGCTGGACGTCTTCACTGGGAGCATCCTTTGGCAGCAAAGTATTGGACCCTTGAGTGCTCTAGATAGTACACCAGT
TGTCGATTCCAACGGGTGGATATCTATTGGTTCTCTGGATGGGTTTCTGTACTCCATATCACCTGGAGGAACTGTAAAGAAGTTCGCCAAGGCATCTTCC
TCCAATTCCGTGATACAAGTTCGCCCATTTGTTGATTGCTCTGGATATGCAGTTTACATATCACAAGCACAAGTGGAAGGAAAAGCCAACCACTTGATTG
GAGACTACAATTATGTAGCAGCAATGAAGCCTACTGGTGTAACCTTCACTCTGCTGGTTCCTGCAACTGGGACTGTCTATTGGTCCGAAAGCTACCCTGG
AGAATTCTGGGCACCATTGTCCCAAAGTGATCTGAAAGGGTTTGTTGTTGATGAGGGGATTATACTGGCATTCGTCGCGGCTTCAATTGAGAAGCTTGTG
TCCACCTGCTCACAAGCAAATCCAAAGCCTGTTGCTGACTACCCAGGGAACAGAAGGAGCCTACTATTATTTTTGCTGTTCGAGTCGATTTTCCTGGTCA
TTTTGGTTGGACTGGTGAGATTCTGCTGCATTTTCTGGAACAAGGAAAAGATTCAGGGGCAACACTTGGGAAGTTTTCTTCATAAAAGGAGGTCTCTTCA
GCAGAAGAAGAAAACGTTGGACAGGACAATCACTGAACTGCACCAAAAAGCTACAGAGGAGGAAGAGACGGGGCACCAAGACATTGAAGAAATCGGCGAC
CTTCTGCGTAAAAGAGATAACCTGGAGAGGAAACTTTCAACAACATACAGCTTGGGGAGAGACAATAGTGGACGAATGTCAATCGACAGTTCGAAGAACC
CGGAAACTTCGCTTCCAACAACGTACAATAGAGGAGCAGCTAGGAGTTACTCCTTCCAGAGCAGAAAGAACGAGAGTGTCACCATCTTTCATGCTGCATC
GTACGATACATCATCGTCTGCAGAAGCTGATGAGGAAAGTTTTTCCAGTTGGACCCCTGAAGAAGAGCAGTACTCACACCAGCCAGATGGGGAAGGAAAA
GGAAAAGCTGCAGCTTACTTAGAAACAGAAAGTTCAGGTAGTGATGATGATGATCCAACGAAATTAAATCAGAAGTATCAGAGGTGTTTGTCGGAGCCAG
GATCGAGCTCGACAGGGTTGGTTAGTCCGGTGGTGGAATCGGTATCACCACCAGGAAGTGGCAGGAGGAGTATGTCGTTGAAGAGGAGAAAGGTATCAGG
TTCAACTAGTTGA
AA sequence
>Lus10003058 pacid=23154529 polypeptide=Lus10003058 locus=Lus10003058.g ID=Lus10003058.BGIv1.0 annot-version=v1.0
MPVQSIFVFLVMLSFASAQFNTDFPGQPRTATRQLSKPLIGDDGRIYACSERFLYAFRSNGSIHWTLHLGSDCNLSMTPVHGGPGLASDRVSKINFQHIG
TSVPAEEVFFGQEGAGEVVGIAVNTLSSSVFINVKNRGLFAYSIINGKLLWSAGPMLFQYGYRLGCRQGVENCYFASVPVIDQCEASLYISNTKGEVYSL
SLHDPRFNWVQDLSFLDEAFTITPGNNGRLYVTIPVKAILLALDVFTGSILWQQSIGPLSALDSTPVVDSNGWISIGSLDGFLYSISPGGTVKKFAKASS
SNSVIQVRPFVDCSGYAVYISQAQVEGKANHLIGDYNYVAAMKPTGVTFTLLVPATGTVYWSESYPGEFWAPLSQSDLKGFVVDEGIILAFVAASIEKLV
STCSQANPKPVADYPGNRRSLLLFLLFESIFLVILVGLVRFCCIFWNKEKIQGQHLGSFLHKRRSLQQKKKTLDRTITELHQKATEEEETGHQDIEEIGD
LLRKRDNLERKLSTTYSLGRDNSGRMSIDSSKNPETSLPTTYNRGAARSYSFQSRKNESVTIFHAASYDTSSSAEADEESFSSWTPEEEQYSHQPDGEGK
GKAAAYLETESSGSDDDDPTKLNQKYQRCLSEPGSSSTGLVSPVVESVSPPGSGRRSMSLKRRKVSGSTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16020 GEX3 gamete-expressed 3 (.1) Lus10003058
[exp]
0 1
AT5G06860 ATPGIP1, PGIP1 polygalacturonase inhibiting p... Lus10021029
[exp]
2.6 0.9593
AT5G06720 ATPA2 peroxidase 2 (.1) Lus10008168
[exp]
6.5 0.9489
AT1G16130 WAKL2 wall associated kinase-like 2 ... Lus10003063
[exp]
7.5 0.9391
AT4G16120 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BET... Lus10025045
[exp]
9.9 0.9453
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Lus10013922
[exp]
10.2 0.9256
AT2G41480 Peroxidase superfamily protein... Lus10020826
[exp]
11.2 0.9294
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Lus10013921
[exp]
12.4 0.9249
Lus10041161
[exp]
16.0 0.9419
AT1G18140 LAC1, ATLAC1 laccase 1 (.1) Lus10040936
[exp]
16.1 0.9442
AT3G26270 CYP71B25 "cytochrome P450, family 71, s... Lus10019463
[exp]
18.5 0.9275

Lus10003058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.