Plant FIBer expression Database

Lus10003060 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G30841 814 / 0 Cofactor-independent phosphoglycerate mutase (.1)
AT4G09520 801 / 0 Cofactor-independent phosphoglycerate mutase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034089
[exp]
978 / 0 AT3G30841 814 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G106200
[exp]
866 / 0 AT3G30841 823 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Potri.017G109500
[exp]
864 / 0 AT3G30841 803 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0088 Alk_phosphatase PF01676 Metalloenzyme Metalloenzyme superfamily
CL0088 PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Representative CDS sequence
>Lus10003060 pacid=23154516 polypeptide=Lus10003060 locus=Lus10003060.g ID=Lus10003060.BGIv1.0 annot-version=v1.0
ATGGGAAGTCCCCAGCAGCCAAAGAGGAGAGTTGCGTTTGTGCTGATCGATGGGATAGGTGACGTTTCACTGCCGAGGTTGGGTTACAAGACTCCTTTGG
AAGCAGCCCACGTTCCCAACTTGGATGCTATAGCATCGGCAGGAGTTAATGGTCTTATGGACCCTGTTGAAGTTGGCCTTGGTTGCGGAAGTGACACTGC
TCACCTTTCCTTGATGGGTTATGATCCACGAGTGTATTACAGGGGTCGAGGTGCATTTGAGTCTATGGGTGCTGGTTTGGCAATGTCGCCCGGTGATATT
GCATTTAAGTCAAACTTTGCAACATTGGACGAGAAATCTGGAATTGTTACGAGTAGAAGAGCTGACAGACACTTTGAGGAAGAAGGCCCAATTCTGTGTA
AAGCGTTGGATGGAATGAAGTTGCCTTCTTTTGCTGAGTACGAGGTTAGAGTGAGATATGCCACAGAACATAGATGTGGAGTTGTTGTCAAAGGACCAAA
GTTAAGTGGAAACATATCAGGAACTGACCCACTAAAGGACAACCGTTTACTTCTAAAGGCTGAAGCTTTAGACAGTACCGATGAGGCCAGACATACAGCT
GTGGTTATTAATGAATTATCAAGGGAGATTTCGAAAATACTAACTTCCCACCCAGTGAATGCCAAACGAGCTTCAGAGGGGAAGAACATAGCTAATGTCG
TCCTGTTAAGAGGATGTGGTATCCGAATTCAGGTTCCTTCGTTCGAACAGAAACATGGCTTGTGGCCATGCATGGTGGCTCCAACCAAAATCATAGCTGG
TTTGGGCATGTCATTAGATATGGATATCCTGGAAGCTCCTGGGGCAACAGGAGATTATAGAACACTGTTAACTTCCAAAGCAACAGCCATAGCCAATGCT
CTCTCTGCTCCAGTTAGCTCCACTCCCAATGTATTTGTACCTGGAGAGGATGAACAAAAGGCAGGCAGATCTGATGGGTACGATTTCGGATTTCTGCATG
TAAAGGCAATAGATGATGCAGGGCATGATAAAGCTAGCATTTTCAAAGTGAAAGGAATGGATGCTGTGGATAAAGCAATAGGGCAACTGGCCAAGCTACT
TTGGCAAGCAGAATCTACCGGGAAGTTCGAGTACTACATTTGTGTCACAGGAGATCACTCAACACCAGTTGAATATGGAGATCATAGTTTCGAGCCAGTT
CCATTTGCCATCTGCAGGTTGAAGGACTTCGTCGGTGCTAGGGGTGGGGAATCCAACGTTATAGAAACTTGCCTCGACTCATTTCCTCTTCCAACGGTGA
ACAAAGATGAGGAATATTCACAGGAAGAGAGAAATCAAGAACATCTGAAAAAGGCTTTTGGTGGCGATTCGGTTTGTGAATACAGCGAGATAGCAGCAGC
AAGGGGATGCCTTGGTCGATTTCCCGGTGGAGAAATGATGGGCATAATAAAGGCGTTTCTGAAACTAAACTCATGA
AA sequence
>Lus10003060 pacid=23154516 polypeptide=Lus10003060 locus=Lus10003060.g ID=Lus10003060.BGIv1.0 annot-version=v1.0
MGSPQQPKRRVAFVLIDGIGDVSLPRLGYKTPLEAAHVPNLDAIASAGVNGLMDPVEVGLGCGSDTAHLSLMGYDPRVYYRGRGAFESMGAGLAMSPGDI
AFKSNFATLDEKSGIVTSRRADRHFEEEGPILCKALDGMKLPSFAEYEVRVRYATEHRCGVVVKGPKLSGNISGTDPLKDNRLLLKAEALDSTDEARHTA
VVINELSREISKILTSHPVNAKRASEGKNIANVVLLRGCGIRIQVPSFEQKHGLWPCMVAPTKIIAGLGMSLDMDILEAPGATGDYRTLLTSKATAIANA
LSAPVSSTPNVFVPGEDEQKAGRSDGYDFGFLHVKAIDDAGHDKASIFKVKGMDAVDKAIGQLAKLLWQAESTGKFEYYICVTGDHSTPVEYGDHSFEPV
PFAICRLKDFVGARGGESNVIETCLDSFPLPTVNKDEEYSQEERNQEHLKKAFGGDSVCEYSEIAAARGCLGRFPGGEMMGIIKAFLKLNS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G30841 Cofactor-independent phosphogl... Lus10003060
[exp]
0 1
AT2G44770 ELMO/CED-12 family protein (.1... Lus10003841
[exp]
5.1 0.8294
AT4G02020 SDG10, SWINGER,... SWINGER, SET DOMAIN-CONTAINING... Lus10041386
[exp]
6.6 0.8304
AT5G19670 Exostosin family protein (.1) Lus10034951
[exp]
8.2 0.7956
AT3G22400 ATLOX5, LOX5 Arabidopsis thaliana lipoxygen... Lus10004915
[exp]
8.8 0.7703
AT4G32700 TEB TEBICHI, helicases;ATP-depende... Lus10007673
[exp]
9.8 0.8032
AT2G41790 Insulinase (Peptidase family M... Lus10018071
[exp]
13.2 0.7835
AT1G51740 ATSYP81, SYP81,... ORTHOLOG OF YEAST UFE1 \(UNKNO... Lus10040237
[exp]
16.1 0.7921
AT2G41790 Insulinase (Peptidase family M... Lus10042064
[exp]
16.7 0.7795
AT4G33620 Cysteine proteinases superfami... Lus10020445
[exp]
24.1 0.7840
AT5G61400 Pentatricopeptide repeat (PPR)... Lus10015716
[exp]
26.1 0.7338

Lus10003060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.