Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15900 484 / 1e-170 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT5G15890 482 / 3e-168 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT3G28150 317 / 8e-105 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT4G01080 309 / 2e-101 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT3G02440 304 / 1e-100 TBL20 TRICHOME BIREFRINGENCE-LIKE 20 (.1) AT4G23790 302 / 7e-99 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G01430 297 / 1e-96 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G11090 288 / 1e-93 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G70230 282 / 2e-91 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT4G25360 250 / 1e-77 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034087 [exp] 807 / 0 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10024167 [exp] 407 / 3e-140 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10005952 [exp] 335 / 8e-113 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10029454 [exp] 333 / 6e-111 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10039438 [exp] 303 / 1e-99 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10039476 [exp] 303 / 3e-99 AT3G28150 428 / 1e-148 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10010704 [exp] 301 / 4e-98 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10032367 [exp] 301 / 8e-98 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 298 / 1e-96 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G105700 [exp] 613 / 0 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 441 / 1e-153 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 441 / 3e-153 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 440 / 5e-153 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.014G095800 [exp] 338 / 5e-113 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.017G073700 [exp] 338 / 5e-113 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.002G168400 [exp] 338 / 1e-112 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.001G093800 [exp] 331 / 6e-110 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 319 / 3e-105 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.011G144100 [exp] 311 / 4e-103 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10003061 pacid=23154525 polypeptide=Lus10003061 locus=Lus10003061.g ID=Lus10003061.BGIv1.0 annot-version=v1.0 ATGGAGTTGAAGAAGCCACAAACTACAAGACTAATCCTCCTCCTCTGCACCTTAGCCATCATTCTCTTGTTCAACATCTTCCCTATTACTTACCGCTCTA TCACCTTCCGCCATGTCAGCTTGGTCCCTGCATACTTCTTCTCCATGAACTCACCACCAACATCCTTACTACCACAGCTCCCTGATGCTGAATGTGATTT GTACAAAGGGGAGTGGGTGGCGAACCACGATGCTCCCTACTACACAAACACAACCTGCTGGGCTATACATGAGCACCAGAACTGCATCAAGTACGGCCGC CCTGACGACGGCTTCATGAAGTGGAGGTGGAAGCCCGACGGGTGCGAGTTACCGGTGTTCAACCCGGCCCAGTTTCTGGAGATTGTGAGGGGGAAATCCT TGGCCTTTGTTGGTGATTCTGTTGGCAGGAACCAAATGCAATCCTTGATTTGCTTGCTCTCCCGGGTGACTTACCCAGTATATGTTTCCACCACAGCAGA TGAAAACTTCAAGCGCTGGAATTACCCATCTCACAATTTCACCATGGCCTCATTTTGGGCACCTCACTTGGTCAAAGCTGAGCAAGAAGAACCCCCAAGT GGCCTCTTCAGCCTTTACCTCGACGAGTTCAATTCAGATTGGACGAGCCAGATCCATGAATTCGACTACATAATCATCAATGCTGGCCACTGGTTCTACC GTCCAGCGGTGTACTTCGAGAACAGAAAAGTTGTTGGCTGCCGGTTTTGTCAGCTCGAGAATGTGACCGATCTGCCCTCGAGTTACGGCCTCATGAAGGC ATTCAGGACAGCTTTTAAAGCCATCAACAGCTTGGAAGGGTACAAGGGCATAACGTACCTCCGGACATTTTCGCCATCACATTTCGAGAACGGAGAGTGG AACGAAGGGGGCGACTGTGCTAGAACAAGGCCTTTCAGACGAAACGAGACGATGCTGCAAGGGATTCACTTTGAGCTGTACATGGCACAGATGGAAGAGT TCAGGAAAGCTGAGAGACAAGGGAAGAATAAAGGCTTGAACTTTAGGCTGCTGGAAACAACACAAGCAATGCTTTTGCGGCCAGATGGGCATCCCAGCAG ATATGGACACCCCCCGAATGCAAATGTGACACTCTACAACGACTGTGTACATTGGTGCCTGCCTGGACCGATCGATACATGGAACGACTTCTTGCTCCAG ATGTTGAAGATGGAAGGCGGCAAAAGATCCTTTCAGGAGAGACTGCATTCAAGTGATAGAAAAATGAGGTTCAGATGA
AA sequence Show only first row Show all	>Lus10003061 pacid=23154525 polypeptide=Lus10003061 locus=Lus10003061.g ID=Lus10003061.BGIv1.0 annot-version=v1.0 MELKKPQTTRLILLLCTLAIILLFNIFPITYRSITFRHVSLVPAYFFSMNSPPTSLLPQLPDAECDLYKGEWVANHDAPYYTNTTCWAIHEHQNCIKYGR PDDGFMKWRWKPDGCELPVFNPAQFLEIVRGKSLAFVGDSVGRNQMQSLICLLSRVTYPVYVSTTADENFKRWNYPSHNFTMASFWAPHLVKAEQEEPPS GLFSLYLDEFNSDWTSQIHEFDYIIINAGHWFYRPAVYFENRKVVGCRFCQLENVTDLPSSYGLMKAFRTAFKAINSLEGYKGITYLRTFSPSHFENGEW NEGGDCARTRPFRRNETMLQGIHFELYMAQMEEFRKAERQGKNKGLNFRLLETTQAMLLRPDGHPSRYGHPPNANVTLYNDCVHWCLPGPIDTWNDFLLQ MLKMEGGKRSFQERLHSSDRKMRFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	0	1
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	1.0	0.9223
AT3G16180			Major facilitator superfamily ...		Lus10014537 [exp]	2.4	0.8567
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	2.8	0.8683
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000690 [exp]	6.3	0.8246
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	8.9	0.8407
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	9.8	0.8613
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	10.7	0.8574
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	12.1	0.8671
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	12.7	0.8527
AT4G33440			Pectin lyase-like superfamily ...		Lus10014799 [exp]	13.1	0.8433

Compare expression of checked genes

Lus10003061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.