Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31290 557 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G63090 206 / 3e-62 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 144 / 1e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 141 / 1e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 140 / 2e-36 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 137 / 2e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 137 / 2e-36 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 129 / 4e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 129 / 5e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G71850 127 / 2e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034086 [exp] 821 / 0 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10003059 [exp] 370 / 3e-129 AT2G31290 258 / 1e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000098 [exp] 209 / 5e-63 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 204 / 3e-61 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012374 [exp] 180 / 9e-51 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 148 / 6e-40 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10016529 [exp] 145 / 4e-39 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 144 / 6e-39 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005755 [exp] 144 / 2e-38 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G191100 [exp] 649 / 0 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 207 / 2e-62 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 170 / 4e-48 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 145 / 8e-39 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 144 / 2e-38 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 140 / 3e-37 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.014G096800 [exp] 141 / 7e-37 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 139 / 5e-36 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 134 / 4e-35 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 130 / 1e-33 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10003062 pacid=23154521 polypeptide=Lus10003062 locus=Lus10003062.g ID=Lus10003062.BGIv1.0 annot-version=v1.0 ATGTATATGAGACTCATGTTCGCTCAAATGCTAGTCAATCGCAGTACTAAGCACAACTCTTTGCCTTCACTGCTTCATCTCTTTCGTGATTTTTCTCTCT GGTCTATGAAGAAGGATCCTGATCTGGAATCTGCTCTATCTCGAAACCGTAGATGGATAGTCAACAATCAAATCAAGAACATTATTCTTAGATGTCCAGA TCAGGTTGCCCCTATCAAACACCTACAGAAAAAGTTTAGAACTCTTGATCTTCAAGGCAAAGCCCTCAATTGGCTGAAGAAATACCCCTGTTGTTTCGAG GTATATCTACAGAATAACGAATACTACTGTCGGTTAACTAAGCGGATGCTTTCATTAGTCGAGGAGGAAGATTCTGTTAAAGAAATGCAAGAGCCTGTTT ATGCAGAGCGGCTGGCCAAGTTGTTGATGCTGACGAAAAAACAAAGGCTTAATGTTGTCAAACTCGGCGAGCTGAAACGAAACTTGGGATTTCCTGATGA TTATATTATCAGAATTCTCCCGAAATATCCCGACATGTTTCGACTTGTCAACCATACCGGGAGAAGGAGTTCGATGGAGATCGAACTTCTATCGTGGAAC TCAGACTTTGCAGTCTCTGCTGTGGAAGAAGCATCCAGTGACCGCTACCGCCCTTGTTTCTCGTGTTCATTGCCTTCGTCTTGGGTTCAATCATGGGAGA GATTCCATGAATTCAATGCAATCCCATACCTATCACCGTACATTCGTTCAAGGGGTTTACTCGAAGGCTCGAAAGAGATGGAAAAACGAACAGTGGGGTT AGTACACGAACTGCTGTCACTAACATTGTGGAAGAAGATGTCAATTGTTAAGCTTGGCCACTTCAAAAAGGAGTTCAATCTACCAGACAAGTTGAATGTT TTGCTCTTGAAGCATCCTGGCATATTCTATGTTTCCAATAGGTACCAGATTTACACAGTTCTTCTAAGGGAAGCGTATAATGGATCGGAACTCAAAGAGA TGGATGATCCTCTTCTTGTTGTTAAGGGGAAATTTGGGGAGTTGATGCAAGAAGGACTTCATGAATATAACCAGCGGCACCATTTAATGAATTTGGAGAA ACAAAAGAAGAAAGGTATCTTTCCTGCAAGGTCCGGGAAACAGAAGGATGGAAGAAGCATCGAAATGTCGGAACAAGATGATAATGGTGATAAGCTAGGT GGTTTGTTTAACCATGAGGAAAGGAAAAGGTTCTATAAGGTTCTCTTTGACGATGCTGGCCCATGA
AA sequence Show only first row Show all	>Lus10003062 pacid=23154521 polypeptide=Lus10003062 locus=Lus10003062.g ID=Lus10003062.BGIv1.0 annot-version=v1.0 MYMRLMFAQMLVNRSTKHNSLPSLLHLFRDFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPDQVAPIKHLQKKFRTLDLQGKALNWLKKYPCCFE VYLQNNEYYCRLTKRMLSLVEEEDSVKEMQEPVYAERLAKLLMLTKKQRLNVVKLGELKRNLGFPDDYIIRILPKYPDMFRLVNHTGRRSSMEIELLSWN SDFAVSAVEEASSDRYRPCFSCSLPSSWVQSWERFHEFNAIPYLSPYIRSRGLLEGSKEMEKRTVGLVHELLSLTLWKKMSIVKLGHFKKEFNLPDKLNV LLLKHPGIFYVSNRYQIYTVLLREAYNGSELKEMDDPLLVVKGKFGELMQEGLHEYNQRHHLMNLEKQKKKGIFPARSGKQKDGRSIEMSEQDDNGDKLG GLFNHEERKRFYKVLFDDAGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	0	1
AT1G67170			unknown protein		Lus10035371 [exp]	1.0	0.8815
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	5.2	0.8481
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	5.7	0.8297
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	7.0	0.8375
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	8.1	0.7765
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10009487 [exp]	12.0	0.8256
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	13.8	0.8415
AT5G36930			Disease resistance protein (TI...		Lus10012311 [exp]	14.1	0.7998
AT5G11250			Disease resistance protein (TI...		Lus10007826 [exp]	16.4	0.7859
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	17.1	0.8482

Compare expression of checked genes

Lus10003062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.