Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16130 488 / 2e-163 WAKL2 wall associated kinase-like 2 (.1) AT1G16260 486 / 3e-163 Wall-associated kinase family protein (.1.2) AT1G79670 484 / 5e-162 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G17910 481 / 2e-160 Wall-associated kinase family protein (.1) AT1G69730 478 / 4e-159 Wall-associated kinase family protein (.1) AT1G16150 477 / 7e-159 WAKL4 wall associated kinase-like 4 (.1) AT1G16160 472 / 7e-158 WAKL5 wall associated kinase-like 5 (.1) AT1G16120 472 / 1e-157 WAKL1 wall associated kinase-like 1 (.1) AT4G31100 474 / 2e-157 wall-associated kinase, putative (.1) AT4G31110 473 / 3e-157 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 1202 / 0 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10038077 [exp] 405 / 2e-131 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10004504 [exp] 365 / 7e-117 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 363 / 6e-116 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10013383 [exp] 353 / 4e-111 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 347 / 2e-109 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013384 [exp] 328 / 1e-101 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013143 [exp] 249 / 1e-77 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10014387 [exp] 253 / 6e-75 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148432 [exp] 633 / 0 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.018G148300 [exp] 614 / 0 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.018G148564 [exp] 612 / 0 AT1G79680 505 / 2e-169 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185688 [exp] 556 / 0 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040500 [exp] 552 / 0 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 547 / 0 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 546 / 0 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185622 [exp] 543 / 0 AT1G16260 551 / 0.0 Wall-associated kinase family protein (.1.2) Potri.018G148498 [exp] 543 / 0 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.001G039900 [exp] 540 / 0 AT1G16130 597 / 0.0 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [flax] [poplar] EGF PF07645 [flax] [poplar] EGF_CA Calcium-binding EGF domain CL0001 [flax] [poplar] PF08488 [flax] [poplar] WAK Wall-associated kinase CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10003063 pacid=23154542 polypeptide=Lus10003063 locus=Lus10003063.g ID=Lus10003063.BGIv1.0 annot-version=v1.0 ATGGCCAAACCTGGCTGCCAAAGTCAATGCGGCAACGTCCAAATACCATTCCCATTCGGCATTCGACCAGGCTGGTACCTTCCCAAATTGTACGAGGAAA GCATGTGTAACACACACAGAACAAAAAACCACAGTACCGTCCCCAACCATTTTGTTTCCAGACCGTACCTCAACCATGTCCATCTCCAGGTTGAGAACAT CTCAGTCGAAACCGGGACCCTTCTCGTCAAGTTCCCAACTGTTGCTAATTGCCACAGCAGTATCAATCGGCAGATTAACTTGGCAGGAAGTCCTTTTGTT CTGTCGTCGACTCGTAACAGGCTGACAGCAGTTGGTTGTGGCAGCCTTGCAATGATGTTGATGAAATCTACAGCTGTTGGAGGATGTATGTCCTTCTGTG ACATGCTCACTCGTCCTGGTGATCTCAGAAACATGACCTGCAATGGTATCAGCTGCTGTCAGACCAATATCCCGTCCAATCTCCAGGTGTTCAATGCAAC TTTATCCTATGTGAAGAATGGTAAGATCCAGAGGAGAGGGGGTAGTCCGAGATGCACCAACTTTGCTTTTCTGGTTGACATCAACTGGTTCAAAAGTGCT AGCTTGAGCCCTTACGCAGTCGGAAGACGAGAACATGTGCGCGTGGTGCTTGACTGGAAGATGGATCGTCAAAACTACACTCTCTTACAACAGAGAATCC CTCTGGGGAATCATTCAACGTATCTCTGCAAAGCGTTGAATGTGACTTCCAAAGAAAGTGTTAGCCCTATGCATTTGGTTCATTGTTCCTGCAAACTTGG GTTCCAAGGAAACCCTTACCTAGAACATGGCTGTCAAGATATCGATGAATGTGAAGATCCGAAGAACAACCCTTGCACACAACATAGCGAATCGTGCCAG AATACGAAAGGAGGTTATGAATGCTACGATAAAATACATCCCAGTGATCCTGGTCATTCTCAGATGGCCATTTTACTAGGCACGATGTTGGGTTTAGGGT TATTATTTCCGATCACCGGTTTCTGGTGGCTATCGAAAGCATTCAGAAGATGGAAGCAGAGAAAGCGGAAGGAGAAGTTCTTCAAGAAAAACGGTGGTCT ATTACTTCAAGAGCAACTAGCTTCTGGAGAGGCAAACGTCGAGAAGATCAAGATGTTCAGTTCAAGAGAGCTAGAGAAGGCCACAGATCATTACAGCATC AACAGACTCCTCGGACAGGGCAGCCAAGGCACAGTGTACAAAGGAATGCTTTCCGATGGAAAGATCGTCGCAGTTAAAAAATCAGAGCTACTTCACGAGG GGAAGCTGAAACAGTTCATCAACGAAGTAGTAATCCTGTCTCAGATCAACCACAGGAATGTGGTCAAGTTGCTAGGTTGCTGCCTTGAAACACAAGTTCC ACTTTTGGTCTACGTGTTCATCCCAAACGGCACTCTCTACCATTTCCTTCAGCAACAAGATATCATCCTGACGTGGAAAACACGCCTTAGGATTGCCACT GAAGTTGCTGGAGCTCTGTCATACCTCCACTCAGCAGCTTCCATGCCTGTTTACCACAGAGACATAAAGTCGACGAATATCTTATTAGATTCGCAATGCA GGGCGAAAATAGCGGATTTTGGAATCTCGAGGTCGATCACCATCGATCAAACTCACCTGACAACTCAGGTACAGGGGACGTTCGGTTACCTGGACCCCGA ATACTACCAATCGAGCAAGTTCACGGAGAAGAGCGACGTTTACAGCTTCGGGGTGGTGCTCGTGGAGCTGCTGACCCGACAGAAAGCGGTTAGTTGTTCG GTGAAGTCGGGTGAGGTTCGGAGCTTGGTGGGATGTTTTATTGTAGAAATGGAGAGGAACTGTGTGTTGGAAATGATTGATGGTGAGGTAATGAAGGAAG CGAAGAGAGAAGATATCCTGAAAGTAGCGGAATTGGCAAAGAAATGTTTGAGCTTGACTGGGAAGGAAAGGCCAACGATGAAACAAGTGACGATTGCGCT TGAGAGCATTCAGAAATTGCAGCTGCAGGATACTCCTTCTTGGCTTGCTTCTGTCCATTAG
AA sequence Show only first row Show all	>Lus10003063 pacid=23154542 polypeptide=Lus10003063 locus=Lus10003063.g ID=Lus10003063.BGIv1.0 annot-version=v1.0 MAKPGCQSQCGNVQIPFPFGIRPGWYLPKLYEESMCNTHRTKNHSTVPNHFVSRPYLNHVHLQVENISVETGTLLVKFPTVANCHSSINRQINLAGSPFV LSSTRNRLTAVGCGSLAMMLMKSTAVGGCMSFCDMLTRPGDLRNMTCNGISCCQTNIPSNLQVFNATLSYVKNGKIQRRGGSPRCTNFAFLVDINWFKSA SLSPYAVGRREHVRVVLDWKMDRQNYTLLQQRIPLGNHSTYLCKALNVTSKESVSPMHLVHCSCKLGFQGNPYLEHGCQDIDECEDPKNNPCTQHSESCQ NTKGGYECYDKIHPSDPGHSQMAILLGTMLGLGLLFPITGFWWLSKAFRRWKQRKRKEKFFKKNGGLLLQEQLASGEANVEKIKMFSSRELEKATDHYSI NRLLGQGSQGTVYKGMLSDGKIVAVKKSELLHEGKLKQFINEVVILSQINHRNVVKLLGCCLETQVPLLVYVFIPNGTLYHFLQQQDIILTWKTRLRIAT EVAGALSYLHSAASMPVYHRDIKSTNILLDSQCRAKIADFGISRSITIDQTHLTTQVQGTFGYLDPEYYQSSKFTEKSDVYSFGVVLVELLTRQKAVSCS VKSGEVRSLVGCFIVEMERNCVLEMIDGEVMKEAKREDILKVAELAKKCLSLTGKERPTMKQVTIALESIQKLQLQDTPSWLASVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10003063 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013922 [exp]	1.4	0.9599
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	3.5	0.9492
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	4.0	0.9574
					Lus10021010 [exp]	7.1	0.9513
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10003058 [exp]	7.5	0.9391
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039300 [exp]	9.6	0.9163
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	10.9	0.9415
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	15.2	0.9490
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	15.9	0.9424
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	21.6	0.9305

Compare expression of checked genes

Lus10003063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.