Plant FIBer expression Database

Lus10003064 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02420 317 / 6e-106 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034084
[exp]
426 / 2e-148 AT3G02420 489 / 2e-174 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G110600
[exp]
354 / 1e-120 AT3G02420 532 / 0.0 unknown protein
Potri.004G104900
[exp]
347 / 7e-118 AT3G02420 513 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10003064 pacid=23154547 polypeptide=Lus10003064 locus=Lus10003064.g ID=Lus10003064.BGIv1.0 annot-version=v1.0
ATGGGGGGAGAGGGCGAAGATCCGCAGAAGTTGAAGAAAGTAGCGGCTGCGACTTATGATTATGAGAACGACCCAAGATGGGCGGATTACTGGTCCAACA
TCCTCATCCCTCCCCACATGGCCTCTCGCGCCGATGTTGTCGATCACTTCAAGCGCAAGTCCGATTGGTTGTCTTGCTTATTTGAGGATTTTAGTCTGGG
TTCTGAGCCTCAAGTTAATTTCGCTGGATTTGTTTCTGGAATTGAGAGAATTTCAGTTTTCAGTTGCGGGTTTACTGCTTTGCTAACAGCGGCTGAAACA
TCTGCGGCGGCCTTTAGCTGGCACACTGATACCCCTGACATGTTGCATCAGCAGGATCCAGATCTTCTGGTCGAGGCAATGTCTTCAACTGGCTCATCCC
AGTCAGCAAAACCGCCTGCATCGTCTTCCTCCTCCTCATCGGGATCCTCGCATGAACAACCTCGCCAGCGTAGTACAGGTCAAACAACCACAAACTCTGG
AGCATCGGCAACTGCAGGGCAAACTCCAACTTCAGGGCGCTGGGATCGTCAAACTATACAATTCTCAATCAATGCTTGGGTTTTTGTTGTGGCCGTGCTG
GCAATCTTCCCTCTTGTACCTAAAAGTCTATCCAATAGAGCTTATCGACTGTCATTCATGGGGACTGCTTGTTCATCTCTGTATTCGTTATACATGCTAT
ACGGGAGGCCCAGAGCATTGAACTTGCAGGCGTTGCAGGTTTACTTGCAGTCCATTGTACCAACCAAAGATTTTATCTATTCTGTCTACTGTCTGACCTT
TGTCACTTCAAACCTATGCCTCACATTTGCCTTGATTCCTATTCTCTGCCGGGCATTGCTGCATATTTCTAAATTCCTAAGGCGTAACTTCAACGGCTCT
TCCTTGTACAGGAAGTATCTTGAAGACCCTTGTGTCTGGGTGGAGTCAAACACCACCACCCTTAGCATTCTATCTTCACATTCAGAAATTGGTCTTGGGT
TCCTCTTAATTATATCTTTGCTTTCGATTAGATGTGTGCTTGGTGGTCACCATATCTCATTTAGCAACGAGGTAATGAATGAGGAGAAAGTGCAATTGTT
GAAGCTGATGTACCATGCCCCAGTCACTGCTGGTTATCATCAAAGCGTTTGGGCTAAAGTTGGGAGGATCGTGAACCCGCTTGTCAGCCGTTACTGCCCA
TTCCTCGACACTCCAATCTCTGCTGTTAAAAGATGGTGGCTTAGGTGA
AA sequence
>Lus10003064 pacid=23154547 polypeptide=Lus10003064 locus=Lus10003064.g ID=Lus10003064.BGIv1.0 annot-version=v1.0
MGGEGEDPQKLKKVAAATYDYENDPRWADYWSNILIPPHMASRADVVDHFKRKSDWLSCLFEDFSLGSEPQVNFAGFVSGIERISVFSCGFTALLTAAET
SAAAFSWHTDTPDMLHQQDPDLLVEAMSSTGSSQSAKPPASSSSSSSGSSHEQPRQRSTGQTTTNSGASATAGQTPTSGRWDRQTIQFSINAWVFVVAVL
AIFPLVPKSLSNRAYRLSFMGTACSSLYSLYMLYGRPRALNLQALQVYLQSIVPTKDFIYSVYCLTFVTSNLCLTFALIPILCRALLHISKFLRRNFNGS
SLYRKYLEDPCVWVESNTTTLSILSSHSEIGLGFLLIISLLSIRCVLGGHHISFSNEVMNEEKVQLLKLMYHAPVTAGYHQSVWAKVGRIVNPLVSRYCP
FLDTPISAVKRWWLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G02420 unknown protein Lus10003064
[exp]
0 1
AT5G42220 Ubiquitin-like superfamily pro... Lus10021830
[exp]
9.4 0.7852
AT4G16280 FCA RNA binding;abscisic acid bind... Lus10029574
[exp]
17.5 0.7575
AT3G28700 Protein of unknown function (D... Lus10007271
[exp]
22.9 0.7545
AT4G19900 alpha 1,4-glycosyltransferase ... Lus10017137
[exp]
30.3 0.6877
AT1G79610 ATNHX6 Na+/H+ antiporter 6, ARABIDOPS... Lus10038727
[exp]
39.5 0.7407
AT1G19270 DA1 DA1 (.1) Lus10016298
[exp]
46.6 0.7009
AT1G68080 2-oxoglutarate (2OG) and Fe(II... Lus10034428
[exp]
46.8 0.7221
AT5G50970 transducin family protein / WD... Lus10043205
[exp]
74.2 0.7175
AT3G01090 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.... Lus10001290
[exp]
75.0 0.6994
AT1G03840 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fin... Lus10018633
[exp]
79.2 0.7062

Lus10003064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.