Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15860 509 / 1e-179 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 503 / 2e-177 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G26120 449 / 4e-155 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034083 [exp] 767 / 0 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10034399 [exp] 486 / 1e-169 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10019156 [exp] 482 / 1e-167 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10035064 [exp] 471 / 4e-163 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017889 [exp] 468 / 8e-162 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10033548 [exp] 47 / 3e-05 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10017587 [exp] 46 / 5e-05 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10002907 [exp] 44 / 0.0002 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110700 [exp] 544 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.004G104800 [exp] 534 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.010G132200 [exp] 453 / 4e-157 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 45 / 5e-05 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028300 [exp] 42 / 0.0005 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10003065 pacid=23154541 polypeptide=Lus10003065 locus=Lus10003065.g ID=Lus10003065.BGIv1.0 annot-version=v1.0 ATGGCAGCGACGGCGGCCATGTCTTCACCTTCACCACAACCAATCTTTCAGTCGTCGGATCGCCACCGCGCATTCTCTCCTCCCTCTGCTGAACTGAGCA AGGATGGATCAGGTACGGAGAGACTGCTTTCCAAGGATGGCAATAACGTCCGCGTCGGCGGATTCAAACAACATCAGCAGCCTCGTCGACGGATGGTGGC GAAGCATGGGCCTCCTCTGAGGCAGAAGTCGTTCACTCGAGATTTCGGTCACGCCGCCTGCGAGACTTACCTCATCACTCGACTGGCAATCCAGCTTCTG CAATACCTCGGGGTAGGTTATCGATGGATCACGAGATTAGCTGCTCTTGGGCTCTATGCGATGCTTCTCATGCCTGGCTTCCTTCAAGTTGCATATTACT ACTACTTTTCTAGTCACGTGAGACGTAGCATCACATATGGTGACCAGCCCAGAAACCGGTTGGATCTACATTTACCCACATGTACTGACGGACCAAAGCC AGTTGTCATATTCGTAACAGGCGGTGCCTGGATTATTGGGTACAAAGCATGGGGTGCTCTTCTTGGGAAACAATTAGCTGAGAGAGGCATCATTGTCGCA TGTGTCGATTACAGAAATTTTCCCCAGGGAACAATCAGTGATATGGTTACAGATGCTTCTCGGGCAATCTCATTTATCTGCAGCAACATCTCTGAATATG GAGGGGACCCTAACAGGATTTATCTGATGGGACAATCAGCAGGTGCACATATTTCCTCATGTGCTCTCTTGGACCAGGCATTCAGGGAGGCAAAGGGAGA AGAGGACCTATGTTGGAGCGTCTCTCAAATAAAAGCCTATTATGGTTTGTCTGGACCTTATGGGTGTCAAATGATAGCTGAAAATTCAATTAGCGGTTAT AGCACCTCTGGTTTCCCTACAATCAGGACAACTTACTCGTACAACTTACTAAATTTGGTTGACCATTTCCACAACCGGGGTCTCTATCGCTCCCTTTTTT TGAGCATCATGGATGGCGAGGAGTCATTGCCTAAATTTTCTCCTGAAGCAAGACTTAAAGATCCAAGAGCCAAAGATGCTGTTTCTCGTTTGCCGCCTAT TGTTCTTTTCCACGGAACTGCAGATAAATCTATCCCATCATGTGCGAGTGAAGCCTTTGTACAGGCTCTCGGAAGCTTAGGAGCCGACGCGGAGCTTGTT CTTTTCAAAGGAAAAACTCATACGGACTTGTTTCTCCAGGATCCATTGAGAGGCGGTAAAGATGAGCTATTTGATCGAATAGTAGCTTGTATACATGCCG GGGATGTGGAAGCTCTTGCCGAAGATGCCAAGGCACCTGGGAGAAGACGCCTGGTTCCAGAACTTTTGTTAAGGTTGGCTGGCAATATCAGCCCATTTTA G
AA sequence Show only first row Show all	>Lus10003065 pacid=23154541 polypeptide=Lus10003065 locus=Lus10003065.g ID=Lus10003065.BGIv1.0 annot-version=v1.0 MAATAAMSSPSPQPIFQSSDRHRAFSPPSAELSKDGSGTERLLSKDGNNVRVGGFKQHQQPRRRMVAKHGPPLRQKSFTRDFGHAACETYLITRLAIQLL QYLGVGYRWITRLAALGLYAMLLMPGFLQVAYYYYFSSHVRRSITYGDQPRNRLDLHLPTCTDGPKPVVIFVTGGAWIIGYKAWGALLGKQLAERGIIVA CVDYRNFPQGTISDMVTDASRAISFICSNISEYGGDPNRIYLMGQSAGAHISSCALLDQAFREAKGEEDLCWSVSQIKAYYGLSGPYGCQMIAENSISGY STSGFPTIRTTYSYNLLNLVDHFHNRGLYRSLFLSIMDGEESLPKFSPEARLKDPRAKDAVSRLPPIVLFHGTADKSIPSCASEAFVQALGSLGADAELV LFKGKTHTDLFLQDPLRGGKDELFDRIVACIHAGDVEALAEDAKAPGRRRLVPELLLRLAGNISPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10003065 [exp]	0	1
AT3G01720			unknown protein		Lus10014878 [exp]	9.5	0.6691
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	9.9	0.6660
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	12.0	0.6910
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	13.5	0.6922
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	13.9	0.6546
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	23.5	0.6420
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	24.6	0.6906
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	25.9	0.6548
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	26.2	0.6689
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	26.5	0.6702

Compare expression of checked genes

Lus10003065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.